Man pages for caper
Comparative Analyses of Phylogenetics and Evolution in R
| anova.pglm | Anova and AIC tables for 'pgls' models. |
| benchmarkDatasets | Datasets used for benchmarking caper |
| BritishBirds | Conservation status of British birds (Thomas 2008) |
| brunch | Comparative analysis using the brunch algorithm. |
| caic-class | The 'caic' S3 object class and methods |
| caic.diagnostics | Diagnostic tools for independent contrasts models |
| caic-methods | Anova and model checking methods for independent contrast... |
| caper-package | Comparative analysis of phylogenetics and evolution in R... |
| clade.matrix | Create a clade matrix from a phylogeny |
| clade.members | Identify tips descended from a node |
| comparative.data | Comparative dataset creation |
| crunch | Comparative analysis using the crunch algorithm. |
| fuscoData | Example dataset for Fusco imbalance calculations |
| fusco.test | Imbalance statistics using Fusco and Cronk's method. |
| growTree | Tree simulation with traits. |
| IsaacEtAl | Example dataset for the caper package |
| macrocaic | Comparative analysis using independent contrasts on species... |
| pd.calc | Calculate and bootstrap phylogenetic diversity measurements. |
| perrisodactyla | Example dataset for the CAIC package |
| pgls | Phylogenetic generalized linear models |
| pgls-methods | Generic model methods for 'pgls' models. |
| pgls.profile | Likelihood profiles and confidence intervals for 'pgls'... |
| phylo.d | Calculates the phylogenetic D statistic |
| phylo.d.subset | Calculates the phylogenetic D statistic across clades within... |
| plot.pglm | Diagnostic plots for 'pgls' models. |
| shorebird | Example dataset for the caper package |
| summary.caic | Summarize a crunch, brunch or macrocaic analysis |
| syrphidae | The syrphidae dataset of Katzourakis et al. 2001 |
| vcv.array | Create a 2D or 3D variance-covariance matrix from a phylogeny |
