dotgen: Gene-Set Analysis via Decorrelation by Orthogonal Transformation

Package: dotgen
Title: Gene-Set Analysis via Decorrelation by Orthogonal Transformation
Version: 0.1.1

xiaoran831213/dotgen: Gene-Set Analysis via Decorrelation by Orthogonal Transformation

Package: dotgen
Title: Gene-Set Analysis via Decorrelation by Orthogonal Transformation
Version: 0.1.0

cst: Correlation among association test statistics

## get genotype and covariate matrices
gno <- readRDS(system.file("extdata", 'rs208294_gno.rds', package="dotgen"))

R/dot.R:

genotype and covariate matrices
#' gno <- readRDS(system.file("extdata", 'rs208294_gno.rds', package="dotgen"))
#' cvr

R/dot.R:

and covariate matrices
#' gno <- readRDS(system.file("extdata", 'rs208294_gno.rds', package="dotgen"))
#' cvr <- readRDS

R/dot.R:

and covariate matrices
#' gno <- readRDS(system.file("extdata", 'rs208294_gno.rds', package="dotgen"))
#' cvr <- readRDS

dot: Decorrelation by Orthogonal Transformation (DOT

## get genotype and covariate matrices
gno <- readRDS(system.file("extdata", 'rs208294_gno.rds', package="dotgen"))

xiaoran831213/DOT: Gene-Set Analysis via Decorrelation by Orthogonal Transformation

Package: dotgen
Title: Gene-Set Analysis via Decorrelation by Orthogonal Transformation
Version: 0.1.0

R/hlp.R:

("extdata", 'rs208294_gno.rds', package="dotgen"))
#' cvr <- readRDS(system.file("extdata", 'rs208294_cvr.rds', package

R/hlp.R:

("extdata", 'rs208294_gno.rds', package="dotgen"))
#' cvr <- readRDS(system.file("extdata", 'rs208294_cvr.rds', package

R/hlp.R:

("extdata", 'rs208294_gno.rds', package="dotgen"))
#' cvr <- readRDS(system.file("extdata", 'rs208294_cvr.rds', package

xiaoran831213/simgen: simulation based on genotype

License: GPL (>= 2)
URL: https://github.com/xiaoran831213/dotgen
Encoding: UTF-8

zsc: Calculate Z-scores from P-values and estimated effects

res <- readRDS(system.file("extdata", 'rs208294_res.rds', package="dotgen"))
## recover Z-score statistics

dot_sst: Methods for combining decorrelated summary statistics

-calculated LD matrix
stt <- readRDS(system.file("extdata", 'art_zsc.rds', package="dotgen"))
sgm <- readRDS(system.file("extdata

Rgraphviz: Provides plotting capabilities for R graph objects

Package: Rgraphviz
Title: Provides plotting capabilities for R graph objects

kasperdanielhansen/Rgraphviz: Provides plotting capabilities for R graph objects

Package: Rgraphviz
Title: Provides plotting capabilities for R graph objects

R/sum.R:

matrix
#' stt <- readRDS(system.file("extdata", 'art_zsc.rds', package="dotgen"))
#' sgm <- readRDS(system.file("extdata

R/sum.R:

and pre-calculated LD matrix
#' stt <- readRDS(system.file("extdata", 'art_zsc.rds', package="dotgen"))
#' sgm <- readRDS

R/sum.R:

and pre-calculated LD matrix
#' stt <- readRDS(system.file("extdata", 'art_zsc.rds', package="dotgen"))
#' sgm <- readRDS