Macarron: Macarron

R: Macarron
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biobakery/Macarron: Prioritization of potentially bioactive metabolic features from epidemiological

Package: Macarron
Version: 1.13.2
Title: Prioritization of potentially bioactive metabolic features from

prioritize: Rank metabolic features and prioritize based on predicted

, mac.ava, mac.qval, mac.es)
Arguments
SummarizedExperiment object created using Macarron::prepInput()

showBest: View highly prioritized bioactives grouped by modules

mac.result
the output of Macarron::Macarron() or Macarron::prioritize().
priority_threshold

tests/testthat/test-Macarron.R:

library(testthat)
library(Macarron)
prism_abundances = system.file("extdata", "demo_abundances.csv", package="Macarron

findMacMod: Cluster metabolic features based on covarying abundances

= NULL,
evaluateMOS = TRUE
Arguments

README.md:

# Macarron User Manual #
Macarron (Metabolome Analysis and Combined Annotation Ranks to pRioritize Novel