API for TrigosTeam/SPIAT
Spatial Image Analysis of Tissues
| Global functions | |
|---|---|
| AUC_of_cross_function | Man page Source code |
| R_BC | Man page Source code |
| SPIAT | Man page |
| average_marker_intensity_within_radius | Man page Source code |
| average_minimum_distance | Man page Source code |
| average_nearest_neighbor_index | Man page Source code |
| average_percentage_of_cells_within_radius | Man page Source code |
| bind_info | Source code |
| calculate_cell_proportions | Man page Source code |
| calculate_cross_functions | Man page Source code |
| calculate_distance_to_margin | Man page Source code |
| calculate_entropy | Man page Source code |
| calculate_minimum_distances_between_celltypes | Man page Source code |
| calculate_pairwise_distances_between_celltypes | Man page Source code |
| calculate_percentage_of_grids | Man page Source code |
| calculate_proportions_of_cells_in_structure | Man page Source code |
| calculate_spatial_autocorrelation | Man page Source code |
| calculate_summary_distances_between_celltypes | Man page Source code |
| calculate_summary_distances_of_cells_to_borders | Man page Source code |
| composition_of_neighborhoods | Man page Source code |
| compute_gradient | Man page Source code |
| count_category | Source code |
| crossing_of_crossK | Man page Source code |
| define_celltypes | Man page Source code |
| define_structure | Man page Source code |
| defined_image | Man page |
| dimensionality_reduction_plot | Man page Source code |
| entropy_gradient_aggregated | Man page Source code |
| fix_ahull | Source code |
| format_cellprofiler_to_spe | Man page Source code |
| format_codex_to_spe | Man page Source code |
| format_colData_to_spe | Man page Source code |
| format_halo_to_spe | Man page Source code |
| format_image_to_spe | Man page Source code |
| format_inform_to_spe | Man page Source code |
| format_spe_to_ppp | Man page Source code |
| get_colData | Source code |
| get_polygon | Source code |
| grid_metrics | Man page Source code |
| identify_bordering_cells | Man page Source code |
| identify_neighborhoods | Man page Source code |
| image_no_markers | Man page |
| image_splitter | Man page Source code |
| marker_intensity_boxplot | Man page Source code |
| marker_prediction_plot | Man page Source code |
| marker_surface_plot | Man page Source code |
| marker_surface_plot_stack | Man page Source code |
| measure_association_to_cell_properties | Man page Source code |
| mixing_score_summary | Man page Source code |
| number_of_cells_within_radius | Man page Source code |
| plot_average_intensity | Man page Source code |
| plot_cell_basic | Source code |
| plot_cell_categories | Man page Source code |
| plot_cell_distances_violin | Man page Source code |
| plot_cell_marker_levels | Man page Source code |
| plot_cell_percentages | Man page Source code |
| plot_composition_heatmap | Man page Source code |
| plot_distance_heatmap | Man page Source code |
| plot_marker_level_heatmap | Man page Source code |
| predict_phenotypes | Man page Source code |
| quiet_basic | Source code |
| remove_intensity_na | Source code |
| select_celltypes | Man page Source code |
| simulated_image | Man page |
| split_image | Source code |
