defined_image: SPE object of a simulated image with defined cell types based...
In TrigosTeam/SPIAT: Spatial Image Analysis of Tissues
defined_image R Documentation
SPE object of a simulated image with defined cell types based on marker
combinations.
Description
A dataset that contains a formatted spe object with cell ids, phenotypes,
defined cell types in 'colData()' and marker intensities in 'assays()'. (The
cell locations are the same with the cells in simulated_image).
Usage
defined_image
Format
An spe object. Assay contains 5 rows (markers) and 4951 columns
(cells); colData contains 4951 rows (cells) and 3 columns (features).
See Also
simulated_image image_no_markers
TrigosTeam/SPIAT documentation built on Nov. 6, 2023, 3:50 p.m.
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| defined_image | R Documentation |
SPE object of a simulated image with defined cell types based on marker combinations.
Description
A dataset that contains a formatted spe object with cell ids, phenotypes,
defined cell types in 'colData()' and marker intensities in 'assays()'. (The
cell locations are the same with the cells in simulated_image).
Usage
defined_image
Format
An spe object. Assay contains 5 rows (markers) and 4951 columns (cells); colData contains 4951 rows (cells) and 3 columns (features).
See Also
simulated_image image_no_markers
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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