Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), HMM, BioHMM, GLAD, CGHseg. Most computations are parallelized (either via forking or with clusters, including MPI and sockets clusters) and use ff for storing data.
|Author||Ramon Diaz-Uriarte <[email protected]> and Oscar M. Rueda <[email protected]>. Wavelet-based aCGH smoothing code from Li Hsu <[email protected]> and Douglas Grove <[email protected]>. Imagemap code from Barry Rowlingson <[email protected]>. HaarSeg code from Erez Ben-Yaacov; downloaded from <http://www.ee.technion.ac.il/people/YoninaEldar/Info/software/HaarSeg.htm>.|
|Bioconductor views||CopyNumberVariants Microarray|
|Maintainer||Ramon Diaz-Uriarte <[email protected]>|
|License||GPL (>= 3)|
|Package repository||View on Bioconductor|
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