ADaCGH2: Analysis of big data from aCGH experiments using parallel computing and ff objects
Version 2.16.0

Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), HMM, BioHMM, GLAD, CGHseg. Most computations are parallelized (either via forking or with clusters, including MPI and sockets clusters) and use ff for storing data.

Package details

AuthorRamon Diaz-Uriarte <> and Oscar M. Rueda <>. Wavelet-based aCGH smoothing code from Li Hsu <> and Douglas Grove <>. Imagemap code from Barry Rowlingson <>. HaarSeg code from Erez Ben-Yaacov; downloaded from <>.
Bioconductor views CopyNumberVariants Microarray
MaintainerRamon Diaz-Uriarte <>
LicenseGPL (>= 3)
Package repositoryView on Bioconductor
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ADaCGH2 documentation built on May 31, 2017, 3:41 p.m.