API for ADaCGH2
Analysis of big data from aCGH experiments using parallel computing and ff objects
| Global functions | |
|---|---|
| BioHMMWrapper | Source code |
| RAM.or.ff | Source code |
| ad_FDRThres | Source code |
| ad_HaarSeg | Source code |
| ad_SegmentByPeaks | Source code |
| add.names.as.attr | Source code |
| break.and.write.vector | Source code |
| buildIM | Source code |
| caughtError | Source code |
| caughtOtherError | Source code |
| caughtOtherError.Web | Source code |
| caughtOtherPackageError.Web | Source code |
| caughtOurError2 | Source code |
| caughtUserError2 | Source code |
| cluster.clean.quit.Web | Source code |
| createIM | Source code |
| createIM2 | Source code |
| createPage | Source code |
| createTableArrChrom | Source code |
| cutFile | Man page Source code |
| distribute | Source code |
| expungeNA | Source code |
| ffListOut | Source code |
| ffVecOut | Source code |
| fig2dev | Source code |
| gcmessage | Source code |
| getCGHValue | Source code |
| getChromValue | Source code |
| getNames | Source code |
| getOutValue | Source code |
| getOutValueRAM3 | Source code |
| getffObj | Source code |
| getffObjNoOpen | Source code |
| hmmWrapper | Source code |
| imCircle | Source code |
| imClose | Source code |
| imDefault | Source code |
| imPoint | Source code |
| imPoly | Source code |
| imRect | Source code |
| imText | Source code |
| imagemap | Source code |
| imagemap3 | Source code |
| inpungeNA | Source code |
| inputEx | Man page |
| inputEx-sp | Man page |
| inputEx.nona | Man page |
| inputToADaCGH | Man page Source code |
| internalBioHMM | Source code |
| internalCGHseg | Source code |
| internalChromPlot | Source code |
| internalDNAcopy | Source code |
| internalDNAcopySegm | Source code |
| internalDNAcopySmooth | Source code |
| internalGLAD | Source code |
| internalHMM | Source code |
| internalHaarSeg | Source code |
| internalMADCall | Source code |
| internalMerge | Source code |
| internalWaveHsu | Source code |
| is.wholeposnumber | Source code |
| lines.imCircle | Source code |
| lines.imDefault | Source code |
| lines.imPoly | Source code |
| lines.imRect | Source code |
| lines.imagemap | Source code |
| mcc | Source code |
| moHTML | Source code |
| mydcat | Source code |
| mydcat2 | Source code |
| mydcat3 | Source code |
| mysize | Source code |
| na.handle.ff | Source code |
| namesff | Source code |
| nfields.one.line | Source code |
| nlines.to.skip.and.nf | Source code |
| nodeWhere | Source code |
| ourMerge | Source code |
| outToffdf | Source code |
| outToffdf2 | Source code |
| outputToCGHregions | Man page Source code |
| pChromPlot | Man page Source code |
| pSegment | Man page |
| pSegmentBioHMM | Man page Source code |
| pSegmentCGHseg | Man page Source code |
| pSegmentDNAcopy | Man page Source code |
| pSegmentGLAD | Man page Source code |
| pSegmentHMM | Man page Source code |
| pSegmentHaarSeg | Man page Source code |
| pSegmentWavelets | Man page Source code |
| piccardsKO | Source code |
| piccardsStretch01 | Source code |
| plt2fig | Source code |
| print.imagemap | Source code |
| puttogetherCGHseg | Source code |
| read.data.column | Source code |
| read.this.column | Source code |
| segmentW | Source code |
| setColClasses | Source code |
| sizesobj | Source code |
| stop.na.inf | Source code |
| tempdir2 | Source code |
| the.time.with.ms | Source code |
| the.time.with.sec | Source code |
| toHTML | Source code |
| toHTML.default | Source code |
| toHTML.imCircle | Source code |
| toHTML.imDefault | Source code |
| toHTML.imPoly | Source code |
| toHTML.imRect | Source code |
| toHTML.imText | Source code |
| toHTML.imagemap | Source code |
| usr2dev | Source code |
| usr2plt | Source code |
| usr2png | Source code |
| vectorForArray | Source code |
| vectorForArrayL2 | Source code |
| vectorForArrayRAM | Source code |
| vectorForArrayRAM2 | Source code |
| vectorFromffList | Source code |
| vectorFromffList2 | Source code |
| warn.too.few.in.chrom | Source code |
| warn.too.few.in.chrom2 | Source code |
| wrapCreateTableArrChr | Source code |
| xytrans | Source code |
| xytrans2 | Source code |
