Files in ANF

Affinity Network Fusion for Complex Patient Clustering

README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

R/AffinityNetworkFusion.R R/SpectralClustering.R vignettes/ANF.Rmd

vignettes/figs/power_of_FeatureEngineering/power_feature_mirnas_NMI.png

vignettes/figs/power_of_FeatureEngineering/power_feature_fpkm_pval.png

vignettes/figs/power_of_FeatureEngineering/power_feature_fpkm_ARI.png

vignettes/figs/power_of_FeatureEngineering/power_feature_fpkm.mirnas_pval.png

vignettes/figs/power_of_FeatureEngineering/power_feature_mirnas_ARI.png

vignettes/figs/power_of_FeatureEngineering/power_feature_fpkm.mirnas_ARI.png

vignettes/figs/power_of_FeatureEngineering/power_feature_fpkm.mirnas_NMI.png

vignettes/figs/power_of_FeatureEngineering/power_feature_mirnas_pval.png

vignettes/figs/power_of_FeatureEngineering/power_feature_fpkm_NMI.png

vignettes/figs/comparisons-SeeCompanionPaper/comparisons_fpkm.methy450_pval.png

vignettes/figs/comparisons-SeeCompanionPaper/comparisons_fpkm.mirnas_ARI.png

vignettes/figs/comparisons-SeeCompanionPaper/comparisons_fpkm.mirnas_pval.png

vignettes/figs/comparisons-SeeCompanionPaper/comparisons_mirnas.methy450_ARI.png

vignettes/figs/comparisons-SeeCompanionPaper/comparisons_fpkm.mirnas.methy450_pval.png

vignettes/figs/comparisons-SeeCompanionPaper/comparisons_fpkm.methy450_ARI.png

vignettes/figs/comparisons-SeeCompanionPaper/comparisons_fpkm.mirnas_NMI.png

vignettes/figs/comparisons-SeeCompanionPaper/comparisons_mirnas.methy450_NMI.png

vignettes/figs/comparisons-SeeCompanionPaper/comparisons_fpkm.methy450_NMI.png

vignettes/figs/comparisons-SeeCompanionPaper/comparisons_fpkm.mirnas.methy450_ARI.png

vignettes/figs/comparisons-SeeCompanionPaper/comparisons_mirnas.methy450_pval.png

vignettes/figs/comparisons-SeeCompanionPaper/comparisons_fpkm.mirnas.methy450_NMI.png

vignettes/figs/power_of_ANF/power_ANF_vst.sel_pval.png

vignettes/figs/power_of_ANF/power_ANF_raw.all_ARI.png

vignettes/figs/power_of_ANF/power_ANF_normalized_ARI.png

vignettes/figs/power_of_ANF/power_ANF_raw.all_pval.png

vignettes/figs/power_of_ANF/power_ANF_log.sel_ARI.png

vignettes/figs/power_of_ANF/power_ANF_log.all_ARI.png

vignettes/figs/power_of_ANF/power_ANF_log.all_NMI.png

vignettes/figs/power_of_ANF/power_ANF_vst.sel_ARI.png

vignettes/figs/power_of_ANF/power_ANF_vst.sel_NMI.png

vignettes/figs/power_of_ANF/power_ANF_log.all_pval.png

vignettes/figs/power_of_ANF/power_ANF_raw.sel_ARI.png

vignettes/figs/power_of_ANF/power_ANF_log.sel_NMI.png

vignettes/figs/power_of_ANF/power_ANF_raw.sel_NMI.png

vignettes/figs/power_of_ANF/power_ANF_normalized_pval.png

vignettes/figs/power_of_ANF/power_ANF_raw.all_NMI.png

vignettes/figs/power_of_ANF/power_ANF_raw.sel_pval.png

vignettes/figs/power_of_ANF/power_ANF_normalized_NMI.png

vignettes/figs/power_of_ANF/power_ANF_log.sel_pval.png

man/pod.Rd man/kNN_graph.Rd man/affinity_matrix.Rd man/ANF.Rd man/eval_clu.Rd man/spectral_clustering.Rd tests/testthat.R tests/testthat/testANF.R tests/testthat/testSpectralClustering.R

inst/NEWS

inst/doc/ANF.Rmd inst/doc/ANF.R

inst/doc/ANF.html

ANF documentation built on Nov. 8, 2020, 7:51 p.m.