ASGSCA: Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models

The package provides tools to model and test the association between multiple genotypes and multiple traits, taking into account the prior biological knowledge. Genes, and clinical pathways are incorporated in the model as latent variables. The method is based on Generalized Structured Component Analysis (GSCA).

AuthorHela Romdhani, Stepan Grinek , Heungsun Hwang and Aurelie Labbe.
Date of publicationNone
MaintainerHela Romdhani <hela.romdhani@mcgill.ca>
LicenseGPL-3
Version1.8.0

View on Bioconductor

Files in this package

ASGSCA/DESCRIPTION
ASGSCA/NAMESPACE
ASGSCA/R
ASGSCA/R/GSCAestim.R ASGSCA/R/GSCAtest.R
ASGSCA/build
ASGSCA/build/vignette.rds
ASGSCA/data
ASGSCA/data/B0.rda
ASGSCA/data/GenPhen.rda
ASGSCA/data/QCAHS.rda
ASGSCA/data/ResQCAHS.rda
ASGSCA/data/W0.rda
ASGSCA/inst
ASGSCA/inst/NEWS.Rd
ASGSCA/inst/doc
ASGSCA/inst/doc/ASGSCA.R
ASGSCA/inst/doc/ASGSCA.Rnw
ASGSCA/inst/doc/ASGSCA.pdf
ASGSCA/man
ASGSCA/man/ASGSCA-package.Rd ASGSCA/man/B0.Rd ASGSCA/man/GSCA.Rd ASGSCA/man/GSCAestim.Rd ASGSCA/man/GenPhen.Rd ASGSCA/man/QCAHS.Rd ASGSCA/man/ResQCAHS.Rd ASGSCA/man/W0.Rd
ASGSCA/vignettes
ASGSCA/vignettes/ASGSCA-concordance.tex
ASGSCA/vignettes/ASGSCA.Rnw
ASGSCA/vignettes/ASGSCA.Rnw.sav
ASGSCA/vignettes/exp.jpg
ASGSCA/vignettes/exp2.jpg
ASGSCA/vignettes/fancyvrb.sty
ASGSCA/vignettes/path.jpg
ASGSCA/vignettes/path0.jpg
ASGSCA/vignettes/pathpart.jpg
ASGSCA/vignettes/pathpart1.jpg
ASGSCA/vignettes/zi4.sty.txt

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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