ASSET: An R package for subset-based association analysis of heterogeneous traits and subtypes
Version 1.14.0

An R package for subset-based analysis of heterogeneous traits and subtypes.

AuthorSamsiddhi Bhattacharjee, Nilanjan Chatterjee and William Wheeler
Bioconductor views Bioinformatics Software
Date of publicationNone
MaintainerWilliam Wheeler <WheelerB@imsweb.com>
LicenseGPL-2 + file LICENSE
Version1.14.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ASSET")

Popular man pages

ASSET: Association analysis for SubSETs
ex_trait: Data for the h.traits example
h.forestPlot: Forest plot for meta-analysis of heterogenerous traits or...
h.summary: Summary results from subset-search.
h.traits: Heterogeneous traits or studies
h.types: Heterogeneous Subtype analysis
p.dlm: Discrete Local Maxima approximate p-value.
See all...

All man pages Function index File listing

Man pages

ASSET: Association analysis for SubSETs
ex_trait: Data for the h.traits example
ex_types: Data for the h.types example
h.forestPlot: Forest plot for meta-analysis of heterogenerous traits or...
h.summary: Summary results from subset-search.
h.traits: Heterogeneous traits or studies
h.types: Heterogeneous Subtype analysis
p.dlm: Discrete Local Maxima approximate p-value.
z.max: Z-score Maximization

Functions

ASSET Man page
N00 Man page Man page
N01 Man page
N10 Man page Man page
N11 Man page Man page
calcP0 Source code
calcP1 Source code
cargs.proc Source code
checkData.rownames Source code
checkData.vars Source code
checkSim Source code
convertPosToVars Source code
corr.logit Source code
corr.mat.logit Source code
data Man page
dlm.pval Source code
ex_trait Man page
ex_types Man page
findMiss.vars Source code
getCI Source code
h.forest Source code
h.forestPlot Man page Source code
h.summary Man page Source code
h.traits Man page Source code
h.traits1 Source code
h.traits2 Source code
h.types Man page Source code
h.types0 Source code
htypes.combine Source code
meta.se Source code
myInv Source code
mySolve Source code
p.bon Source code
p.boot Source code
p.dlm Man page Source code
p.tube Source code
prob.sim Source code
score.compute Source code
traits.forest Source code
traits.forest0 Source code
traits.meta Source code
tube.pval Source code
tubeSim Source code
types.forest Source code
types.forest0 Source code
types.score Source code
types.wald Source code
z.max Man page Source code

Files

DESCRIPTION
LICENSE
NAMESPACE
NEWS
R
R/pvals.R
R/traits.R
R/types.R
R/utils.R
build
build/vignette.rds
data
data/ex_trait.rda
data/ex_types.rda
inst
inst/doc
inst/doc/vignette.R
inst/doc/vignette.Rnw
inst/doc/vignette.pdf
inst/sampleData
inst/sampleData/vdata.rda
inst/unitTests
inst/unitTests/test_h.traits.R
inst/unitTests/test_h.types.R
inst/unitTests/test_p.dlm.R
inst/unitTests/test_z.max.R
man
man/ASSET.Rd
man/ex_trait.Rd
man/ex_types.Rd
man/h.forestPlot.Rd
man/h.summary.Rd
man/h.traits.Rd
man/h.types.Rd
man/p.dlm.Rd
man/z.max.Rd
tests
tests/runTests.R
vignettes
vignettes/vignette.Rnw
ASSET documentation built on May 20, 2017, 10:12 p.m.

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