Files in ATACseqQC

ATAC-seq Quality Control

NEWS.md README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

R/ATACseqQC.R R/enrichedFragments.R R/saturationPlot.R R/TSSEscore.R R/splitBam.R R/fragSizeDist.R R/pwmscores.R R/estimateLibComplexity.R R/splitGAlignmentsByCut.R R/vPlot.R R/shiftReads.R R/readsDupFreq.R R/bamQC.R R/shiftGAlignmentsList.R R/writeListOfGAlignments.R R/PTscore.R R/NFRscore.R R/distanceDyad.R R/factorFootprints.R R/plotFootprints.R R/footprintsScanner.R R/shiftGAlignments.R R/readBamFile.R R/peakDet.R R/plotCorrelation.R

vignettes/nature.csl

vignettes/bibliography.bib

vignettes/CTCFvPlot.png

vignettes/CTCFfootprints.png

vignettes/ATACseqQC.Rmd man/DB.Rd man/plotCorrelation.Rd man/shiftGAlignments.Rd man/distanceDyad.Rd man/enrichedFragments.Rd man/splitGAlignmentsByCut.Rd man/factorFootprints.Rd man/splitBam.Rd man/shiftReads.Rd man/pwmscores.Rd man/shiftGAlignmentsList.Rd man/vPlot.Rd man/saturationPlot.Rd man/readsDupFreq.Rd man/PTscore.Rd man/peakdet.Rd man/estimateLibComplexity.Rd man/plotFootprints.Rd man/writeListOfGAlignments.Rd man/footprintsScanner.Rd man/ATACseqQC-package.Rd man/bamQC.Rd man/TSSEscore.Rd man/fragSizeDist.Rd man/NFRscore.Rd man/readBamFile.Rd tests/runTests.R tests/testthat/test_bamQC.R tests/testthat/test_fragSizeDist.R tests/testthat/test_shiftReads.R tests/testthat/test_factorFootprints.R tests/testthat/test_splitGAlignmentsByCut.R

inst/CITATION

inst/doc/ATACseqQC.R inst/doc/ATACseqQC.Rmd

inst/doc/ATACseqQC.html

inst/extdata/IGVSnapshot.R

inst/extdata/GL2.bam

inst/extdata/GL3.bam

inst/extdata/GL4.bam

inst/extdata/jolma2013.motifs.bindingList.95.rds

inst/extdata/GL1.bam

inst/extdata/GL4.bam.bai

inst/extdata/GL3.bam.bai

inst/extdata/GL2.bam.bai

inst/extdata/GL1.bam.bai

inst/extdata/splited/mononucleosome.bam

inst/extdata/splited/mononucleosome.bam.bai

inst/extdata/splited/dinucleosome.bam.bai

inst/extdata/splited/trinucleosome.bam

inst/extdata/splited/NucleosomeFree.bam

inst/extdata/splited/trinucleosome.bam.bai

inst/extdata/splited/dinucleosome.bam

inst/extdata/splited/NucleosomeFree.bam.bai

ATACseqQC documentation built on Nov. 8, 2020, 11 p.m.