as_workspace: Render R packages as AnVIL workspaces

In AnVILPublish: Publish Packages and Other Resources to AnVIL Workspaces

Description

as_workspace() renders a package source tree (e.g., from a git checkout) as an AnVIL workspace.

Usage

as_workspace(path, namespace, name = NULL, create = FALSE, update = FALSE)

Arguments

path	character(1) path to the location of the package source code.
namespace	character(1) AnVIL namespace (billing project) to be used.
name	character(1) AnVIL workspace name or NULL. If NULL, the workspace name is set to "Bioconductor-Package-<pkgname>", where <pkgname> is the name of the package (from the DESCRIPTION file) at path.
create	logical(1) Create a new project?
update	logical(1) Update (over-write the existing DASHBOARD and any similarly named notebooks) an existing workspace? If niether create nore update is TRUE, the code to create a workspace is run but no output generated; this can be useful during debugging.

Details

Information from the DESCRIPTION file and Rmd YAML files are used to populate the 'DASHBOARD' tab.

See `?as_notebook()` for details on how vignettes are processed
to notebooks, and the limitations of the current approach.

Value

as_workspace() returns the URL of the updated workspace, invisibly.

AnVILPublish documentation built on Nov. 8, 2020, 5:10 p.m.