ArrayExpress: Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

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Access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Author
Audrey Kauffmann, Ibrahim Emam, Michael Schubert
Date of publication
None
Maintainer
Ugis Sarkans <ugis@ebi.ac.uk>
License
Artistic-2.0
Version
1.34.0

View on Bioconductor

Man pages

ae2bioc
Convert MAGE-TAB files from raw data into a Bioconductor...
ArrayExpress
R objects from ArrayExpress database
extract.zip
Unzip archives in a specified directory
getAE
Download MAGE-TAB files from ArrayExpress in a specified...
getcolproc
Return the possible column names from processed MAGE-TAB...
getcolraw
Return the possible column names from raw MAGE-TAB files
procset
Convert processed MAGE-TAB files into a Bioconductor object
queryAE
XML query of the ArrayExpress repository

Files in this package

ArrayExpress/DESCRIPTION
ArrayExpress/NAMESPACE
ArrayExpress/R
ArrayExpress/R/ArrayExpress.r
ArrayExpress/R/ae2bioc.r
ArrayExpress/R/extract.zip.r
ArrayExpress/R/getAE.r
ArrayExpress/R/getcolproc.r
ArrayExpress/R/parseMAGE.r
ArrayExpress/R/procset.r
ArrayExpress/R/queryAE.r
ArrayExpress/build
ArrayExpress/build/vignette.rds
ArrayExpress/inst
ArrayExpress/inst/CITATION
ArrayExpress/inst/doc
ArrayExpress/inst/doc/ArrayExpress.R
ArrayExpress/inst/doc/ArrayExpress.Rnw
ArrayExpress/inst/doc/ArrayExpress.pdf
ArrayExpress/man
ArrayExpress/man/ArrayExpress.Rd
ArrayExpress/man/ae2bioc.Rd
ArrayExpress/man/extract.zip.Rd
ArrayExpress/man/getAE.Rd
ArrayExpress/man/getcolproc.Rd
ArrayExpress/man/getcolraw.Rd
ArrayExpress/man/procset.Rd
ArrayExpress/man/queryAE.Rd
ArrayExpress/vignettes
ArrayExpress/vignettes/ArrayExpress.Rnw
ArrayExpress/vignettes/QT_list.txt