ArrayTV: Implementation of wave correction for arrays

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Wave correction for genotyping and copy number arrays

Author
Eitan Halper-Stromberg
Date of publication
None
Maintainer
Eitan Halper-Stromberg <Eitan177@gmail.com>
License
GPL (>= 2)
Version
1.12.0

View on Bioconductor

Man pages

ArrayTV-package
ArrayTV-implementation of GC correction for arrays
gcCorrectMain
gcCorrectMain
gcCorrect-methods
Methods for 'gcCorrect' in Package 'ArrayTV'
methods-computeGC
Compute the GC composition for selected windows

Files in this package

ArrayTV/DESCRIPTION
ArrayTV/NAMESPACE
ArrayTV/R
ArrayTV/R/AllGenerics.R
ArrayTV/R/CorrectM.R
ArrayTV/R/calctvScore.R
ArrayTV/R/computeGC.R
ArrayTV/R/correctionTVscore.R
ArrayTV/R/gcCorrectMain.R
ArrayTV/R/gcFracAllWin.R
ArrayTV/R/gcFracOneRange.R
ArrayTV/R/getGCinBestWindowGenome.R
ArrayTV/R/methods-gcCorrect.R
ArrayTV/R/priorFracs.R
ArrayTV/R/priorFracsRestOfGenome.R
ArrayTV/build
ArrayTV/build/vignette.rds
ArrayTV/inst
ArrayTV/inst/doc
ArrayTV/inst/doc/ArrayTV.R
ArrayTV/inst/doc/ArrayTV.Rnw
ArrayTV/inst/doc/ArrayTV.pdf
ArrayTV/inst/extdata
ArrayTV/inst/extdata/afcM1List.rda
ArrayTV/inst/extdata/array_logratios.rda
ArrayTV/inst/extdata/cbs_out.rda
ArrayTV/inst/extdata/nimcM1List.rda
ArrayTV/inst/unitTests
ArrayTV/inst/unitTests/test_gcCorrectMain.R
ArrayTV/man
ArrayTV/man/ArrayTV-package.Rd
ArrayTV/man/gcCorrect-methods.Rd
ArrayTV/man/gcCorrectMain.Rd
ArrayTV/man/methods-computeGC.Rd
ArrayTV/tests
ArrayTV/tests/runTests.R
ArrayTV/vignettes
ArrayTV/vignettes/ArrayTV.Rnw
ArrayTV/vignettes/refs.bib