ArrayTV: Implementation of wave correction for arrays

Wave correction for genotyping and copy number arrays

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ArrayTV")
AuthorEitan Halper-Stromberg
Bioconductor views CopyNumberVariation
Date of publicationNone
MaintainerEitan Halper-Stromberg <Eitan177@gmail.com>
LicenseGPL (>= 2)
Version1.14.0

View on Bioconductor

Functions

ArrayTV Man page
ArrayTV-package Man page
computeGC,BafLrrSetList-method Man page
computeGC-methods Man page
computeGC,numeric-method Man page
gcCorrect Man page
gcCorrect,BafLrrSetList-method Man page
gcCorrect,BafLrrSet-method Man page
gcCorrect,BeadStudioSet-method Man page
gcCorrectMain Man page
gcCorrect,matrix-method Man page
gcCorrect-methods Man page

Files

DESCRIPTION
NAMESPACE
R
R/AllGenerics.R R/CorrectM.R R/calctvScore.R R/computeGC.R R/correctionTVscore.R R/gcCorrectMain.R R/gcFracAllWin.R R/gcFracOneRange.R R/getGCinBestWindowGenome.R R/methods-gcCorrect.R R/priorFracs.R R/priorFracsRestOfGenome.R
build
build/vignette.rds
inst
inst/doc
inst/doc/ArrayTV.R
inst/doc/ArrayTV.Rnw
inst/doc/ArrayTV.pdf
inst/extdata
inst/extdata/afcM1List.rda
inst/extdata/array_logratios.rda
inst/extdata/cbs_out.rda
inst/extdata/nimcM1List.rda
inst/unitTests
inst/unitTests/test_gcCorrectMain.R
man
man/ArrayTV-package.Rd man/gcCorrect-methods.Rd man/gcCorrectMain.Rd man/methods-computeGC.Rd
tests
tests/runTests.R
vignettes
vignettes/ArrayTV.Rnw
vignettes/refs.bib

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