API for BBCAnalyzer
BBCAnalyzer: an R/Bioconductor package for visualizing base counts
| Global functions | |
|---|---|
| BBCAnalyzer | Man page |
| Bases By Cigar Analyzer | Man page |
| Bases Coverage | Man page |
| BasesByCigar Analyzer | Man page |
| BasesByCigarAnalyzer | Man page |
| Cigar Analysis | Man page |
| analyze Bases | Man page |
| analyze Bases Plot Only | Man page |
| analyzeBases | Man page Source code |
| analyzeBasesPlotOnly | Man page Source code |
| analyzeReads | Source code |
| checkBamInput | Source code |
| checkVcfInput | Source code |
| determineTarget | Source code |
| frequencyAnalysis | Source code |
| frequencyAnalysisVcf | Source code |
| plotCountsPerSample | Source code |
| plotCountsPerSampleRelative | Source code |
| plotCountsPerSampleRelativeVcf | Source code |
| plotCountsPerSampleRelativeVcf_plot | Source code |
| plotCountsPerSampleRelative_col | Source code |
| plotCountsPerSampleRelative_col_insert | Source code |
| plotCountsPerSampleRelative_insert | Source code |
| plotCountsPerSampleRelative_plot | Source code |
| plotCountsPerSampleVcf | Source code |
| plotCountsPerSampleVcf_plot | Source code |
| plotCountsPerSample_abs | Source code |
| plotCountsPerSample_col | Source code |
| plotCountsPerSample_col_insert | Source code |
| plotCountsPerSample_insert | Source code |
| plotCountsPerSample_plot | Source code |
| plotCountsPerSample_ref | Source code |
| plotCountsPerTarget | Source code |
| plotCountsPerTargetRelative | Source code |
| plotCountsPerTargetRelativeVcf | Source code |
| plotCountsPerTargetRelativeVcf_plot | Source code |
| plotCountsPerTargetRelative_col | Source code |
| plotCountsPerTargetRelative_col_insert | Source code |
| plotCountsPerTargetRelative_insert | Source code |
| plotCountsPerTargetRelative_plot | Source code |
| plotCountsPerTargetVcf | Source code |
| plotCountsPerTargetVcf_plot | Source code |
| plotCountsPerTarget_abs | Source code |
| plotCountsPerTarget_col | Source code |
| plotCountsPerTarget_col_insert | Source code |
| plotCountsPerTarget_insert | Source code |
| plotCountsPerTarget_plot | Source code |
| plotCountsPerTarget_ref | Source code |
| processVcfFile | Source code |
| reportVariants | Source code |
| reportVariantsVcf | Source code |
