API for BRGenomics
Tools for the Efficient Analysis of High-Resolution Genomics Data
| Global functions | |
|---|---|
| .aggbins_sep_inout_na | Source code |
| .apply_sf_late | Source code |
| .binVector | Source code |
| .binxval | Source code |
| .blacklist | Source code |
| .blacklist_cvg | Source code |
| .check_args | Source code |
| .check_clist | Source code |
| .check_fields | Source code |
| .check_iter | Source code |
| .check_nfs | Source code |
| .check_xor_args | Source code |
| .checkdsnames | Source code |
| .close_int | Source code |
| .collapse_reads | Source code |
| .dfList2df | Source code |
| .fixbins | Source code |
| .getCountsByPositions | Source code |
| .getCountsByRegions | Source code |
| .getCoverageByPositions | Source code |
| .getCoverageByRegions | Source code |
| .get_cbp | Source code |
| .get_cbp_mw | Source code |
| .get_cbr | Source code |
| .get_cov_mat | Source code |
| .get_cvbp | Source code |
| .get_cvbp_mw | Source code |
| .get_cvbr | Source code |
| .get_deseq_results | Source code |
| .get_dwidth | Source code |
| .get_idx_ctrl | Source code |
| .get_maxsite | Source code |
| .get_maxsite_mw | Source code |
| .get_nf_snr | Source code |
| .get_nf_srpmc | Source code |
| .get_positions_in_regions | Source code |
| .get_se | Source code |
| .get_signal_mat | Source code |
| .get_spike_chrom | Source code |
| .get_spikecounts | Source code |
| .get_spikecounts_expand | Source code |
| .get_stranded_cvg | Source code |
| .import_bam | Source code |
| .lnorm_multi | Source code |
| .melt_counts | Source code |
| .meltmat | Source code |
| .meltmw | Source code |
| .merge_args | Source code |
| .merge_gr | Source code |
| .merge_gr_exact | Source code |
| .msgs_early_sf | Source code |
| .multiplex_gr | Source code |
| .nicemsg | Source code |
| .norm_gr | Source code |
| .pidx_multi | Source code |
| .pidx_single | Source code |
| .quick_check_paired | Source code |
| .rename_field_score | Source code |
| .shift_gr | Source code |
| .split_cbp | Source code |
| .split_cvbp | Source code |
| .subsample_gr | Source code |
| .try_int_score | Source code |
| .try_unnorm_signal | Source code |
| .when_sf | Source code |
| BRGenomics | Man page |
| BRGenomics-package | Man page |
| PROseq | Man page |
| PROseq-data | Man page |
| PROseq_paired | Man page |
| aggregateByNdimBins | Man page Source code |
| applyNFsGRanges | Man page Source code |
| binNdimensions | Man page Source code |
| bootstrap-signal-by-position | Man page |
| densityInNdimBins | Man page Source code |
| genebodies | Man page Source code |
| getCountsByPositions | Man page Source code |
| getCountsByRegions | Man page Source code |
| getDESeqDataSet | Man page Source code |
| getDESeqResults | Man page Source code |
| getMaxPositionsBySignal | Man page Source code |
| getPausingIndices | Man page Source code |
| getSpikeInCounts | Man page Source code |
| getSpikeInNFs | Man page Source code |
| getSpikeInReads | Man page Source code |
| getStrandedCoverage | Man page Source code |
| import-functions | Man page |
| import_bam | Man page Source code |
| import_bam_ATACseq | Man page Source code |
| import_bam_PROcap | Man page Source code |
| import_bam_PROseq | Man page Source code |
| import_bedGraph | Man page Source code |
| import_bigWig | Man page Source code |
| intersectByGene | Man page Source code |
| isBRG | Man page Source code |
| makeGRangesBRG | Man page Source code |
| mcMap | Source code |
| mergeGRangesData | Man page Source code |
| mergeReplicates | Man page Source code |
| metaSubsample | Man page Source code |
| metaSubsampleMatrix | Man page Source code |
| reduceByGene | Man page Source code |
| removeSpikeInReads | Man page Source code |
| spikeInNormGRanges | Man page Source code |
| subsampleBySpikeIn | Man page Source code |
| subsampleGRanges | Man page Source code |
| subsetRegionsBySignal | Man page Source code |
| tidyChromosomes | Man page Source code |
| txs_dm6_chr4 | Man page |
