Efficient tools for the analysis of high-resolution genomics data in R.
Explore the documentation: https://mdeber.github.io/
As of Bioconductor 3.11 (release date April 28, 2020), BRGenomics can be installed directly from Bioconductor:
# install.packages("BiocManager")
BiocManager::install("BRGenomics")
Alternatively, the latest development version can be installed from GitHub:
# install.packages("remotes")
remotes::install_github("mdeber/BRGenomics@R3")
BRGenomics (and Bioconductor 3.11) require R version 4.0 (release April
24, 2020). Installing the R3
branch, as shown above, can be installed
under R >= 3.5
If you install the development version from Github and you’re using Windows, Rtools for Windows is required.
See the documentation website, which includes an introductory vignette, as well as the documentation for currently implemented functions, complete with demonstrative example code. The package currently includes example PRO-seq data[1].
dataset.gr
may become x
GRangesList
objects (should be already complete)BigWigFile
/BigWigFileList
objects (to avoid
loading data into memory)GPos
objects by defaultgenebodies()
function (like many GenomicRanges
functions are)Any scripts or data that you put into this service are public.
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