BeadDataPackR: Compression of Illumina BeadArray data
Version 1.28.0

Provides functionality for the compression and decompression of raw bead-level data from the Illumina BeadArray platform

Browse man pages Browse package API and functions Browse package files

AuthorMike Smith, Andy Lynch
Bioconductor views Microarray
Date of publicationNone
MaintainerMike Smith <mike.l.smith@cancer.org.uk>
LicenseGPL-2
Version1.28.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("BeadDataPackR")

Man pages

compressBeadData: Write raw bead level data to a compressed format.
decompressBeadData: Decompress a file in the beadarray binary format
example: Example bead-level data
extractLocsFile: Retrieve only the .locs file information
readCompressedData: Extract data for specific bead-types from a compressed file

Functions

allowOffset Source code
applyFlags Source code
bitsToInt Source code
combineFiles Source code
compressBeadData Man page Source code
convertTo2Ints Source code
createIndices Source code
decodeIndices Source code
decompressBeadData Man page Source code
example Man page
extractLocsFile Man page Source code
numberOfChannels Source code
parseHeader Source code
readBeadLevelTextFile Source code
readCompressedData Man page Source code
readCoordinates Source code
readHeader Source code
readIntensities Source code
readLocsFile Source code
reduceIndexSize Source code
reformCoordinates Source code
reformInt Source code
removeDuplicates Source code
writeArrayName Source code
writeBabBody Source code
writeBabHeader Source code
writeCoordinates Source code
writeIntensities Source code
writeLocsFile Source code

Files

DESCRIPTION
NAMESPACE
R
R/combineFiles.R
R/compressBeadData.R
R/decompressBeadData.R
R/locsFileIndexing.R
R/readBabFile.R
R/readRawData.R
R/scanBabFile.R
R/utilityFunctions.R
R/writeBabFile.R
R/writeLocsFile.R
build
build/vignette.rds
inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/BeadDataPackR.R
inst/doc/BeadDataPackR.pdf
inst/doc/BeadDataPackR.rnw
inst/extdata
inst/extdata/example.bab
inst/extdata/example.txt
inst/extdata/example_Grn.locs
man
man/compressBeadData.Rd
man/decompressBeadData.Rd
man/example.Rd
man/extractLocsFile.Rd
man/readCompressedData.Rd
src
src/BeadDataPackR.c
src/BeadDataPackR.h
src/R_init_BeadDataPackR.c
vignettes
vignettes/BeadDataPackR.rnw
BeadDataPackR documentation built on May 20, 2017, 10:28 p.m.