BeadDataPackR: Compression of Illumina BeadArray data

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Provides functionality for the compression and decompression of raw bead-level data from the Illumina BeadArray platform

Author
Mike Smith, Andy Lynch
Date of publication
None
Maintainer
Mike Smith <mike.l.smith@cancer.org.uk>
License
GPL-2
Version
1.26.0

View on Bioconductor

Man pages

compressBeadData
Write raw bead level data to a compressed format.
decompressBeadData
Decompress a file in the beadarray binary format
example
Example bead-level data
extractLocsFile
Retrieve only the .locs file information
readCompressedData
Extract data for specific bead-types from a compressed file

Files in this package

BeadDataPackR/DESCRIPTION
BeadDataPackR/NAMESPACE
BeadDataPackR/R
BeadDataPackR/R/combineFiles.R
BeadDataPackR/R/compressBeadData.R
BeadDataPackR/R/decompressBeadData.R
BeadDataPackR/R/locsFileIndexing.R
BeadDataPackR/R/readBabFile.R
BeadDataPackR/R/readRawData.R
BeadDataPackR/R/scanBabFile.R
BeadDataPackR/R/utilityFunctions.R
BeadDataPackR/R/writeBabFile.R
BeadDataPackR/R/writeLocsFile.R
BeadDataPackR/build
BeadDataPackR/build/vignette.rds
BeadDataPackR/inst
BeadDataPackR/inst/CITATION
BeadDataPackR/inst/NEWS
BeadDataPackR/inst/doc
BeadDataPackR/inst/doc/BeadDataPackR.R
BeadDataPackR/inst/doc/BeadDataPackR.pdf
BeadDataPackR/inst/doc/BeadDataPackR.rnw
BeadDataPackR/inst/extdata
BeadDataPackR/inst/extdata/example.bab
BeadDataPackR/inst/extdata/example.txt
BeadDataPackR/inst/extdata/example_Grn.locs
BeadDataPackR/man
BeadDataPackR/man/compressBeadData.Rd
BeadDataPackR/man/decompressBeadData.Rd
BeadDataPackR/man/example.Rd
BeadDataPackR/man/extractLocsFile.Rd
BeadDataPackR/man/readCompressedData.Rd
BeadDataPackR/src
BeadDataPackR/src/BeadDataPackR.c
BeadDataPackR/src/BeadDataPackR.h
BeadDataPackR/src/R_init_BeadDataPackR.c
BeadDataPackR/vignettes
BeadDataPackR/vignettes/BeadDataPackR.rnw