Man pages for BiRewire
High-performing routines for the randomization of a bipartite graph (or a binary event matrix), undirected and directed signed graph preserving degree distribution (or marginal totals)

birewire.analysis.bipartiteAnalysis of Jaccard similarity trends across switching steps.
birewire.analysis.dsgAnalysis of Jaccard similarity trends across switching steps.
birewire.analysis.undirectedAnalysis of Jaccard similarity trends across switching steps.
birewire.bipartite.from.incidenceConverts an incidence matrix into a bipartite graph.
birewire.build.dsgTransform a dsg object in a SIF file.
birewire.induced.bipartiteTransform a SIF data frame into a dsg object (a list of...
birewire.load.dsgRead a SIF file from a given path
BiRewire-packageThe BiRewire package
birewire.rewire.bipartiteEfficient rewiring of bipartite graphs
birewire.rewire.bipartite.and.projectionsAnalysis and rewiring function processing a bipartite graphs...
birewire.rewire.dsgEfficient rewiring of directed signed graphs
birewire.rewire.undirectedEfficient rewiring of undirected graphs
birewire.sampler.bipartiteEfficient generation of a null model for a given bipartite...
birewire.sampler.dsgEfficient generation of a null model for a given dsg.
birewire.sampler.undirectedEfficient generation of a null model for a given undirected...
birewire.similarityCompute the Jaccard similarity index between two binary...
birewire.similarity.dsgCompute the Jaccard similarity index between dsg.
birewire.slum.to.sparseMatrixThe function transforms a triplet sparse matrix from slum...
birewire.visual.monitoring.bipartiteVisual monitoring of the Markov chain underlying the SA for...
birewire.visual.monitoring.dsgVisual monitoring of the Markov chain underlying the SA for...
birewire.visual.monitoring.undirectedVisual monitoring of the Markov chain underlying the SA for...
BRCA_binary_matrixTCGA Brest Cancer data
test_dsgTool example of dsg
BiRewire documentation built on Nov. 1, 2018, 3:34 a.m.