High-performing routines for the randomization of a bipartite graph (or a binary event matrix), undirected and directed signed graph preserving degree distribution (or marginal totals)

birewire.analysis.bipartite | Analysis of Jaccard similarity trends across switching steps. |

birewire.analysis.dsg | Analysis of Jaccard similarity trends across switching steps. |

birewire.analysis.undirected | Analysis of Jaccard similarity trends across switching steps. |

birewire.bipartite.from.incidence | Converts an incidence matrix into a bipartite graph. |

birewire.build.dsg | Transform a dsg object in a SIF file. |

birewire.induced.bipartite | Transform a SIF data frame into a dsg object (a list of... |

birewire.load.dsg | Read a SIF file from a given path |

BiRewire-package | The BiRewire package |

birewire.rewire.bipartite | Efficient rewiring of bipartite graphs |

birewire.rewire.bipartite.and.projections | Analysis and rewiring function processing a bipartite graphs... |

birewire.rewire.dsg | Efficient rewiring of directed signed graphs |

birewire.rewire.undirected | Efficient rewiring of undirected graphs |

birewire.sampler.bipartite | Efficient generation of a null model for a given bipartite... |

birewire.sampler.dsg | Efficient generation of a null model for a given dsg. |

birewire.sampler.undirected | Efficient generation of a null model for a given undirected... |

birewire.similarity | Compute the Jaccard similarity index between two binary... |

birewire.similarity.dsg | Compute the Jaccard similarity index between dsg. |

birewire.slum.to.sparseMatrix | The function transforms a triplet sparse matrix from slum... |

birewire.visual.monitoring.bipartite | Visual monitoring of the Markov chain underlying the SA for... |

birewire.visual.monitoring.dsg | Visual monitoring of the Markov chain underlying the SA for... |

birewire.visual.monitoring.undirected | Visual monitoring of the Markov chain underlying the SA for... |

BRCA_binary_matrix | TCGA Brest Cancer data |

test_dsg | Tool example of dsg |

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