Man pages for BioCor
Functional similarities
| addSimilarities | Additive integration of similarities |
| AintoB | Insert a matrix into another |
| BioCor-package | BioCor: A package to calculate functional similarities |
| clusterGeneSim | Similarity score between clusters of genes based on genes... |
| clusterSim | Similarity score between clusters of genes based on pathways... |
| combinadic | i-th combination of n elements taken from r |
| combineScores | Combining values |
| combineSources | Combine different sources of pathways |
| conversions | Convert the similarities formats |
| diceSim | Compare pathways |
| duplicateIndices | Finds the indices of the duplicated events of a vector |
| geneSim | Similarity score genes based on pathways similarity |
| incidence-list-method | Creates the incidence matrix |
| inverseList | Invert a list |
| mclusterGeneSim | Similarity score between clusters of genes based on genes... |
| mclusterSim | Similarity score between clusters of genes based on pathways... |
| mgeneSim | Similarity score genes based on pathways similarity |
| mpathSim | Calculates the Dice similarity between pathways |
| pathSim | Calculates the Dice similarity between pathways |
| removeDup | Remove duplicated rows and columns |
| seq2mat | Transforms a vector to a symmetric matrix |
| similarities | Apply a function to a list of similarities |
| weighted | Weighted operations |
