BioCor-package: BioCor: A package to calculate functional similarities

Description Important functions

Description

Calculates a functional similarity measure between gene identifiers based on the pathways described on KEGG and REACTOME.

Important functions

pathSim

Calculates the similarity between two pathways

geneSim

Calculates the similarity (based on pathSim) between two genes

clusterSim

Calculates the similarity between two clusters of genes by joining pathways of each gene.

clusterGeneSim

Calculates the similarity between two clusters of genes by comparing the similarity between the genes of a cluster

similarities

Allows to combine the value of matrices of similarities

conversions

Two functions to convert similarity measures

weighted

Functions provided to combine similarities


BioCor documentation built on Nov. 1, 2018, 3:34 a.m.