GSE-class: Class "GSE": A class to represent gene set enrichment data

In BioMVCClass: Model-View-Controller (MVC) Classes That Use Biobase

Description

GSE is a class to represent gene set enrichment data and will be used in the modelData slot in the gseModel object. This class will store all of the information that pertains to performing gene set enrichment.

Objects from the Class

Objects can be created by calls of the form new("GSE", ...).

Slots

incidMat:

the incidence matrix that shows the relationship between the genes and the gene sets

gTestStat:

the test statistic for the genes relationship with the phenotype

gsTestStat:

the test statistic for the gene set

expData:

the experimental data (here it will be of class ExpressionSet)

descr:

a description of the gene set being studied

Methods

incidMat<-

Sets the incidMat slot

incidMat

Returns the incidMat slot

gTestStat<-

Sets the gTestStat slot

gTestStat

Returns the gTestStat slot

gsTestStat<-

Sets the gsTestStat slot

gsTestStat

Returns the gsTestStat slot

expData<-

Sets the expData slot

expData

Returns the expData slot

descr<-

Sets the descr slot

descr

Returns the descr slot

Author(s)

Elizabeth Whalen

See Also

gseModel-class

BioMVCClass documentation built on Nov. 8, 2020, 8:32 p.m.