Description Usage Arguments Details Value Note Author(s) References See Also Examples
View source: R/701-readFASTA.R
Read Protein/DNA Sequences in FASTA Format
1 2 | readFASTA(file = system.file("protseq/P00750.fasta", package = "BioMedR"),
legacy.mode = TRUE, seqonly = FALSE)
|
file |
The name of the file which the sequences in fasta format are
to be read from. If it does not contain an absolute or
relative path, the file name is relative to the current
working directory, |
legacy.mode |
If set to |
seqonly |
If set to |
This function reads protein sequences in FASTA format.
The result character vector
Note that any different sets of instances (chunklets), e.g. 1, 3, 7 and 4, 6, might belong to the same class and might belong to different classes.
Min-feng Zhu <wind2zhu@163.com>, Nan Xiao <http://r2s.name>
Pearson, W.R. and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Proceedings of the National Academy of Sciences of the United States of America, 85: 2444-2448
See readPDB
for reading protein sequences
in PDB format.
1 | P00750 = readFASTA(system.file('protseq/P00750.fasta', package = 'BioMedR'))
|
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