OBOSet-class: OBOSet class

In BiocSet: Representing Different Biological Sets

Description

A class representing the 'OBO' file format as a BiocSet.

Usage

OBOSet(elementset, element, set, metadata)

Arguments

elementset	A tibble with element set information.
element	A tibble with element information.
set	A tibble with set information.
metadata	A tibble with key-value pairs describing OBO file format header data

Value

An S4 OBOOSet object. OBO sets conform to the 'obo' file format, with OBO 'Term' entries corresponding to elements. Parent / child relationships (e.g., 'is_a') are summarized as 'parents', 'ancestors', and 'children' character list columns of 'set'.

Examples

OBOSet()
oboFile <- system.file(package = "BiocSet", "extdata", "sample_go.obo")
import(oboFile)

BiocSet documentation built on Nov. 8, 2020, 7:48 p.m.