Man pages for BitSeq
Transcript expression inference and differential expression analysis for RNA-seq data
| BitSeq-package | Bayesian Inference of Transcripts from Sequencing data |
| estimateDE | Estimate condition mean expression and calculate Probability... |
| estimateExpression | Estimate expression of transcripts |
| estimateHyperPar | Estimate hyperparameters for DE model using expression... |
| estimateVBExpression | Estimate expression of transcripts using VB |
| getDE | Estimate Probability of Positive Log Ratio |
| getExpression | Estimate transcript expression |
| getGeneExpression | Calculate gene expression or relative within gene expression |
| getMeanVariance | Calculate mean and variance of expression samples |
| loadSamples | Loading and saving expression samples |
| parseAlignment | Compute probabilities of alignments |
| transcriptInfo | Manage information about transcript reference |
| transcriptInfoFile | Manage file containing information about transcript reference |
