CARNIVAL: A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

An upgraded causal reasoning tool from Melas et al in R with updated assignments of TFs' weights from PROGENy scores. Optimization parameters can be freely adjusted and multiple solutions can be obtained and aggregated.

Package details

AuthorEnio Gjerga <> Panuwat Trairatphisan Anika Liu Alberto Valdeolivas Nikolas Peschke
Bioconductor views GeneExpression Network Transcriptomics
MaintainerEnio Gjerga <>
LicenseApache License (== 3.0) | file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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CARNIVAL documentation built on Nov. 8, 2020, 5:24 p.m.