CCPROMISE: PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data

Perform Canonical correlation between two forms of high demensional genetic data, and associate the first compoent of each form of data with a specific biologically interesting pattern of associations with multiple endpoints. A probe level analysis is also implemented.

Author
Xueyuan Cao <xueyuan.cao@stjude.org> and Stanley.pounds <stanley.pounds@stjude.org>
Date of publication
None
Maintainer
Xueyuan Cao <xueyuan.cao@stjude.org>
License
GPL (>= 2)
Version
1.0.0

View on Bioconductor

Man pages

CANN
Canonical Correlation of Two Sets of Genomic Data
CCPROMISE
PROMISE Analysis with Canonical Correlation for Two Forms of...
CCPROMISE-package
PRojection Onto the Most Interesting Statistical Evidence...
exmplESet
Example of Conceptual Expression Set
exmplGeneSet
Example of Conceptual Gene Annotation
exmplMSet
Example of Conceptual Methylation Set
exmplPat
Example of Conceptual Phenotype Pattern Definition Set
PrbCor
Probe Level Correlation of Two Sets of Genomic Data
PrbPROMISE
PROMISE Analysis with Two Forms of Genomic Data at Probe...
PROMISE2
PROMISE Analysis of Two Genomic Sets

Files in this package

CCPROMISE/DESCRIPTION
CCPROMISE/NAMESPACE
CCPROMISE/R
CCPROMISE/R/CANN.R
CCPROMISE/R/CCPROMISE.R
CCPROMISE/R/PROMISE2.R
CCPROMISE/R/PrbCor.R
CCPROMISE/R/PrbPROMISE.R
CCPROMISE/R/datSel.R
CCPROMISE/build
CCPROMISE/build/vignette.rds
CCPROMISE/data
CCPROMISE/data/exmplESet.rda
CCPROMISE/data/exmplGeneSet.rda
CCPROMISE/data/exmplMSet.rda
CCPROMISE/data/exmplPat.rda
CCPROMISE/inst
CCPROMISE/inst/doc
CCPROMISE/inst/doc/CCPROMISE.R
CCPROMISE/inst/doc/CCPROMISE.Rnw
CCPROMISE/inst/doc/CCPROMISE.pdf
CCPROMISE/man
CCPROMISE/man/CANN.Rd
CCPROMISE/man/CCPROMISE-package.Rd
CCPROMISE/man/CCPROMISE.Rd
CCPROMISE/man/PROMISE2.Rd
CCPROMISE/man/PrbCor.Rd
CCPROMISE/man/PrbPROMISE.Rd
CCPROMISE/man/exmplESet.Rd
CCPROMISE/man/exmplGeneSet.Rd
CCPROMISE/man/exmplMSet.Rd
CCPROMISE/man/exmplPat.Rd
CCPROMISE/vignettes
CCPROMISE/vignettes/CCPROMISE.Rnw