CCPROMISE: PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data
Version 1.2.0

Perform Canonical correlation between two forms of high demensional genetic data, and associate the first compoent of each form of data with a specific biologically interesting pattern of associations with multiple endpoints. A probe level analysis is also implemented.

Browse man pages Browse package API and functions Browse package files

AuthorXueyuan Cao <xueyuan.cao@stjude.org> and Stanley.pounds <stanley.pounds@stjude.org>
Bioconductor views GeneExpression Microarray
Date of publicationNone
MaintainerXueyuan Cao <xueyuan.cao@stjude.org>
LicenseGPL (>= 2)
Version1.2.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CCPROMISE")

Man pages

CANN: Canonical Correlation of Two Sets of Genomic Data
CCPROMISE: PROMISE Analysis with Canonical Correlation for Two Forms of...
CCPROMISE-package: PRojection Onto the Most Interesting Statistical Evidence...
exmplESet: Example of Conceptual Expression Set
exmplGeneSet: Example of Conceptual Gene Annotation
exmplMSet: Example of Conceptual Methylation Set
exmplPat: Example of Conceptual Phenotype Pattern Definition Set
PrbCor: Probe Level Correlation of Two Sets of Genomic Data
PrbPROMISE: PROMISE Analysis with Two Forms of Genomic Data at Probe...
PROMISE2: PROMISE Analysis of Two Genomic Sets

Functions

CANN Man page Source code
CCPROMISE Man page Source code
CCPROMISE-package Man page
PROMISE2 Man page Source code
PrbCor Man page Source code
PrbPROMISE Man page Source code
datSel Source code
exmplESet Man page
exmplGeneSet Man page
exmplMSet Man page
exmplPat Man page

Files

DESCRIPTION
NAMESPACE
R
R/CANN.R
R/CCPROMISE.R
R/PROMISE2.R
R/PrbCor.R
R/PrbPROMISE.R
R/datSel.R
build
build/vignette.rds
data
data/exmplESet.rda
data/exmplGeneSet.rda
data/exmplMSet.rda
data/exmplPat.rda
inst
inst/doc
inst/doc/CCPROMISE.R
inst/doc/CCPROMISE.Rnw
inst/doc/CCPROMISE.pdf
man
man/CANN.Rd
man/CCPROMISE-package.Rd
man/CCPROMISE.Rd
man/PROMISE2.Rd
man/PrbCor.Rd
man/PrbPROMISE.Rd
man/exmplESet.Rd
man/exmplGeneSet.Rd
man/exmplMSet.Rd
man/exmplPat.Rd
vignettes
vignettes/CCPROMISE.Rnw
CCPROMISE documentation built on May 20, 2017, 9:30 p.m.