CNTools: Convert segment data into a region by sample matrix to allow for other high level computational analyses.

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

AuthorJianhua Zhang
Date of publicationNone
MaintainerJ. Zhang <jzhang@jimmy.harvard.edu>
LicenseLGPL
Version1.30.0

View on Bioconductor

Files in this package

CNTools/DESCRIPTION
CNTools/NAMESPACE
CNTools/R
CNTools/R/ClassDefination.R CNTools/R/SupportingFunctions.R CNTools/R/zzz.R
CNTools/build
CNTools/build/vignette.rds
CNTools/data
CNTools/data/geneInfo.rda
CNTools/data/sampleData.rda
CNTools/inst
CNTools/inst/doc
CNTools/inst/doc/HowTo.R
CNTools/inst/doc/HowTo.Rnw
CNTools/inst/doc/HowTo.pdf
CNTools/man
CNTools/man/CNSeg-class.Rd CNTools/man/RS-class.Rd CNTools/man/cor-methods.Rd CNTools/man/diffBy-methods.Rd CNTools/man/dist-methods.Rd CNTools/man/genefilter-methods.Rd CNTools/man/getRS-methods.Rd CNTools/man/madFilter-methods.Rd
CNTools/src
CNTools/src/getratios.c
CNTools/vignettes
CNTools/vignettes/HowTo.Rnw
CNTools/vignettes/fig01.png
CNTools/vignettes/fig02.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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