API for CNTools
Convert segment data into a region by sample matrix to allow for other high level computational analyses.
| Global functions | |
|---|---|
| .onLoad | Source code |
| .onUnload | Source code |
| CNSeg | Man page Source code |
| CNSeg-class | Man page |
| RS | Source code |
| RS-class | Man page |
| convertNA | Source code |
| convertNAByChrom | Source code |
| convertRS | Source code |
| diffBy | Man page Source code |
| diffBy,ANY-method | Man page |
| diffBy,RS-method | Man page |
| diffBy-method | Man page |
| filterByMad | Source code |
| filterPair | Source code |
| filterRS | Source code |
| findOverlapingSegs | Source code |
| geneInfo | Man page |
| genefilter,RS-method | Man page |
| genefilter-methods | Man page |
| getCommonSegValues | Source code |
| getCor | Man page |
| getCor,ANY-method | Man page |
| getCor,RS-method | Man page |
| getCor-method | Man page |
| getDist | Man page |
| getDist,ANY-method | Man page |
| getDist,RS-method | Man page |
| getDist-method | Man page |
| getPairCor | Source code |
| getPairDist | Source code |
| getPairwise | Source code |
| getRS | Man page |
| getRS,CNSeg-method | Man page |
| getRS-method | Man page |
| getReducedSeg | Source code |
| madFilter | Man page |
| madFilter,ANY-method | Man page |
| madFilter,RS-method | Man page |
| madFilter-method | Man page |
| rs | Man page |
| rs,RS-method | Man page |
| rs<- | Man page |
| rs<-,RS-method | Man page |
| sampleData | Man page |
| seg2RS | Source code |
| segBy | Man page |
| segBy,RS-method | Man page |
| segList | Man page |
| segList,CNSeg-method | Man page |
| segList-method | Man page |
| segList<- | Man page |
| segList<-,CNSeg-method | Man page |
| show,CNSeg-method | Man page |
| show,RS-method | Man page |
| sortByChromNLoc | Source code |
