CellMapper: Predict genes expressed selectively in specific cell types

Infers cell type-specific expression based on co-expression similarity with known cell type marker genes. Can make accurate predictions using publicly available expression data, even when a cell type has not been isolated before.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CellMapper")
AuthorBrad Nelms
Bioconductor views GeneExpression Microarray Software
Date of publicationNone
MaintainerBrad Nelms <bnelms.research@gmail.com>
LicenseArtistic-2.0
Version1.0.0

View on Bioconductor

Files

.BBSoptions
DESCRIPTION
NAMESPACE
R
R/CM.inputchecks.R R/CM.utilities.R R/CMprep.R R/CMsearch.R R/CellMapperList-class.R R/ReplicateManuscript.R
build
build/vignette.rds
data
data/ExampleQueryGenes.rda
data/NegativeControlGenes.rda
data/PositiveControlGenes.rda
inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/CellMapper.R
inst/doc/CellMapper.Rnw
inst/doc/CellMapper.pdf
man
man/CMprep.Rd man/CMsearch.Rd man/CellMapperList-class.Rd man/ExampleGeneLists.Rd man/ReplicateManuscript.Rd
vignettes
vignettes/CellMapper.Rnw
vignettes/bibliography.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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