CellMapper: Predict genes expressed selectively in specific cell types

Share:

Infers cell type-specific expression based on co-expression similarity with known cell type marker genes. Can make accurate predictions using publicly available expression data, even when a cell type has not been isolated before.

Author
Brad Nelms
Date of publication
None
Maintainer
Brad Nelms <bnelms.research@gmail.com>
License
Artistic-2.0
Version
1.0.0

View on Bioconductor

Man pages

CellMapperList-class
Class to contain expression data pre-processed for the...
CMprep
Pre-process a gene expression dataset for CellMapper
CMsearch
Predict cell type-expressed genes using CellMapper
ExampleGeneLists
Example Gene Lists
ReplicateManuscript
Replicate Results from CellMapper Manuscript

Files in this package

CellMapper/.BBSoptions
CellMapper/DESCRIPTION
CellMapper/NAMESPACE
CellMapper/R
CellMapper/R/CM.inputchecks.R
CellMapper/R/CM.utilities.R
CellMapper/R/CMprep.R
CellMapper/R/CMsearch.R
CellMapper/R/CellMapperList-class.R
CellMapper/R/ReplicateManuscript.R
CellMapper/build
CellMapper/build/vignette.rds
CellMapper/data
CellMapper/data/ExampleQueryGenes.rda
CellMapper/data/NegativeControlGenes.rda
CellMapper/data/PositiveControlGenes.rda
CellMapper/inst
CellMapper/inst/CITATION
CellMapper/inst/NEWS
CellMapper/inst/doc
CellMapper/inst/doc/CellMapper.R
CellMapper/inst/doc/CellMapper.Rnw
CellMapper/inst/doc/CellMapper.pdf
CellMapper/man
CellMapper/man/CMprep.Rd
CellMapper/man/CMsearch.Rd
CellMapper/man/CellMapperList-class.Rd
CellMapper/man/ExampleGeneLists.Rd
CellMapper/man/ReplicateManuscript.Rd
CellMapper/vignettes
CellMapper/vignettes/CellMapper.Rnw
CellMapper/vignettes/bibliography.bib