CellMapper: Predict genes expressed selectively in specific cell types

Infers cell type-specific expression based on co-expression similarity with known cell type marker genes. Can make accurate predictions using publicly available expression data, even when a cell type has not been isolated before.

AuthorBrad Nelms
Date of publicationNone
MaintainerBrad Nelms <bnelms.research@gmail.com>
LicenseArtistic-2.0
Version1.0.0

View on Bioconductor

Files

CellMapper/.BBSoptions
CellMapper/DESCRIPTION
CellMapper/NAMESPACE
CellMapper/R
CellMapper/R/CM.inputchecks.R CellMapper/R/CM.utilities.R CellMapper/R/CMprep.R CellMapper/R/CMsearch.R CellMapper/R/CellMapperList-class.R CellMapper/R/ReplicateManuscript.R
CellMapper/build
CellMapper/build/vignette.rds
CellMapper/data
CellMapper/data/ExampleQueryGenes.rda
CellMapper/data/NegativeControlGenes.rda
CellMapper/data/PositiveControlGenes.rda
CellMapper/inst
CellMapper/inst/CITATION
CellMapper/inst/NEWS
CellMapper/inst/doc
CellMapper/inst/doc/CellMapper.R
CellMapper/inst/doc/CellMapper.Rnw
CellMapper/inst/doc/CellMapper.pdf
CellMapper/man
CellMapper/man/CMprep.Rd CellMapper/man/CMsearch.Rd CellMapper/man/CellMapperList-class.Rd CellMapper/man/ExampleGeneLists.Rd CellMapper/man/ReplicateManuscript.Rd
CellMapper/vignettes
CellMapper/vignettes/CellMapper.Rnw
CellMapper/vignettes/bibliography.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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