accessors: Accessor functions for individual slots of 'MS2spectrum' and...

In CluMSID: Clustering of MS2 Spectra for Metabolite Identification

Description

Accessor functions for individual slots of MS2spectrum and pseudospectrum objects

Usage

accessID(x)

accessAnnotation(x)

accessPrecursor(x)

accessRT(x)

accessPolarity(x)

accessSpectrum(x)

accessNeutralLosses(x)

Arguments

x	An object of class MS2spectrum or pseudospectrum

Value

The value of the respective slot of the object (id, annotation, precursor, rt, spectrum, neutral_losses)

Examples

load(file = system.file("extdata",
    "annotatedSpeclist.RData",
    package = "CluMSIDdata"))

accessID(annotatedSpeclist[[1]])

load(file = system.file("extdata",
    "annotatedSpeclist.RData",
    package = "CluMSIDdata"))

accessAnnotation(annotatedSpeclist[[1]])

load(file = system.file("extdata",
    "annotatedSpeclist.RData",
    package = "CluMSIDdata"))

accessPrecursor(annotatedSpeclist[[1]])

load(file = system.file("extdata",
    "annotatedSpeclist.RData",
    package = "CluMSIDdata"))

accessRT(annotatedSpeclist[[1]])

load(file = system.file("extdata",
    "annotatedSpeclist.RData",
    package = "CluMSIDdata"))

accessPolarity(annotatedSpeclist[[1]])

load(file = system.file("extdata",
    "annotatedSpeclist.RData",
    package = "CluMSIDdata"))

accessSpectrum(annotatedSpeclist[[1]])

load(file = system.file("extdata",
    "annotatedSpeclist.RData",
    package = "CluMSIDdata"))

accessNeutralLosses(annotatedSpeclist[[1]])

CluMSID documentation built on Nov. 8, 2020, 7:46 p.m.