download_Yeast_Go_terms: downloads the description of Gene Ontology attributes

In ClusterJudge: Judging Quality of Clustering Methods using Mutual Information

Description

The full description of Gene Ontology attributes are provided for example by the Saccharomyces Genome Database (SGD).

Usage

download_Yeast_Go_terms(
  url.GO.terms = "http://downloads.yeastgenome.org/curation/literature/go_terms.tab")

Arguments

url.GO.terms

The web site address where the description of Gene Ontology attribute files is located.

Details

The file is expected to be in tab delimited format having the following columns: 'GOID' ,'GO_Term', 'GO_Aspect', 'GO_Term_Definition'

Value

a data.frame containing the information provided by the Gene Ontology consortium

Note

the function is optional. It only helps user in understanding what is the meaning of the GO attributes for the Yeast examples.

Author(s)

Adrian Pasculescu

References

http://www.yeastgenome.org/ http://www.geneontology.org/

See Also

download_Yeast_GO_mapping

Examples

    GO.terms <- download_Yeast_Go_terms()
    str(GO.terms)

ClusterJudge documentation built on March 11, 2021, 2 a.m.