API for CoRegFlux
CoRegFlux
| Global functions | |
|---|---|
| FBA_step | Man page Source code |
| GPRCurvesToMetabolicGeneCurves | Source code |
| GPRToMetabolicGene | Source code |
| ODCurveToFluxCurves | Man page Source code |
| ODCurveToMetabolicGeneCurves | Man page Source code |
| ODToFluxBounds | Man page Source code |
| ODToMetabolicGenes | Source code |
| ODcurveToMetCurve | Man page |
| ODtoflux | Man page |
| PredictedGeneState | Man page |
| PrepareGeneTable | Source code |
| PrepareRegulatorTable | Source code |
| PrepareTrainDataInf | Source code |
| SC_EXP_DATA | Man page |
| SC_GRN_1 | Man page |
| SC_Test_data | Man page |
| SC_experiment_influence | Man page |
| Simulation | Man page Source code |
| Simulation_Step | Man page Source code |
| adjust_constraints_to_observed_rates | Man page Source code |
| aliases_SC | Man page |
| build_exchange_met | Man page Source code |
| continuous_gpr | Man page Source code |
| convert_metabolites_to_model_names | Man page Source code |
| coregflux_static | Man page Source code |
| euler_step_biomass | Man page Source code |
| euler_step_metabolites | Man page Source code |
| evaluate_softplus | Source code |
| fluxBoundsToGPR | Source code |
| fluxCurvesToGPRCurves | Source code |
| get_biomass_flux_position | Man page Source code |
| get_fba_fluxes_from_observations | Man page Source code |
| get_fva_intervals_from_observations | Man page Source code |
| get_linear_model | Man page Source code |
| get_metabolites_exchange_fluxes | Man page Source code |
| gpr_expression | Man page Source code |
| gpr_expression_tmp | Source code |
| iMM904 | Man page |
| logRates | Source code |
| logistic | Source code |
| parseSubs | Source code |
| perturbation_function | Man page Source code |
| perturbation_function_twosided | Source code |
| predict_continuous_model | Source code |
| predict_linear_model_influence | Man page Source code |
| propagateBoundsDown | Source code |
| propagateBoundsUp | Source code |
| relativeCurve | Source code |
| rulesToGraph | Source code |
| setInitialBounds | Source code |
| train_continuous_model | Man page Source code |
| update_fluxes_constraints_GRegulation | Man page Source code |
| update_fluxes_constraints_geneKOOV | Man page Source code |
| update_fluxes_constraints_influence | Man page Source code |
| update_fluxes_state | Man page Source code |
| update_system_state | Man page Source code |
| update_uptake_fluxes_constraints_metabolites | Man page Source code |
| visFluxCurves | Man page Source code |
| visMetabolicGeneCurves | Man page Source code |
