Man pages for CoRegFlux
CoRegFlux

adjust_constraints_to_observed_ratesAdjust the constraint of the model to observed rates
aliases_SCaliases_SC data
build_exchange_metBuild the exchange metabolite data.frame
continuous_gprContinuous evaluation of the gpr rules
convert_metabolites_to_model_namesConvert metabolites name to the model equivalent
coregflux_staticUpdate the model using the provided gene regulatory network...
euler_step_biomassEuler step biomass
euler_step_metabolitesCompute the metabolite concentrations at the next time point
FBA_stepFlux balance analysis solution for the model
get_biomass_flux_positionGet biomass flux position
get_fba_fluxes_from_observationsGet fluxes balance from an observed growth rate
get_fva_intervals_from_observationsGet intervals of flux variability (FVA) from an observed...
get_linear_modelTrain a linear model
get_metabolites_exchange_fluxesGet metabolites exchange fluxes
gpr_expressionTransform a logic gpr rule string to a list and then evaluate...
iMM904iMM904
ODCurveToFluxCurvesODCurveToFluxCurves
ODCurveToMetabolicGeneCurvesODCurveToMetabolicGeneCurves
ODcurveToMetCurveODcurveToMetCurve data
ODtofluxODtoflux data
ODToFluxBoundsODToFluxBounds
perturbation_functionPerturbation function
PredictedGeneStatePredictedGeneState data
predict_linear_model_influencePredict the gene expression level based on condition-specific...
SC_EXP_DATASC_EXP_DATA data
SC_experiment_influenceSC_experiment_influence data
SC_GRN_1SC_GRN_1 data
SC_Test_dataSC_Test_data data
SimulationSimulation using Dynamic Flux balance analysis over time as...
Simulation_StepSingle simulation step
train_continuous_modelTrain a linear model and predict the gene expression from an...
update_fluxes_constraints_geneKOOVUpdate the fluxes constraints to simulate gene KO or...
update_fluxes_constraints_GRegulationUpdate fluxes constraints
update_fluxes_constraints_influenceUpdate the fluxes constraints to simulate TF KO or...
update_fluxes_stateUpdate the fluxes bounds given the metabolites concentrations
update_system_stateUpdate the fluxes, metabolites concentration and biomass in...
update_uptake_fluxes_constraints_metabolitesUpdate the fluxes constraints given the metabolite...
visFluxCurvesVisualize Fluxes Curves
visMetabolicGeneCurvesVisualize Metabolic Gene Curves
CoRegFlux documentation built on Nov. 8, 2020, 5:21 p.m.