CopyNumber450k: R package for calling CNV from Illumina 450k methylation microarrays
Version 1.8.0

This package contains a set of functions that allow CNV calling from Illumina 450k methylation microarrays.

AuthorSimon Papillon-Cavanagh, Jean-Philippe Fortin, Nicolas De Jay
Date of publicationNone
MaintainerSimon Papillon-Cavanagh <simon.papillon-cavanagh@mail.mcgill.ca>
LicenseArtistic-2.0
Version1.8.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CopyNumber450k")

Popular man pages

CNV450kSet: CNV450kSet instances
See all...

All man pages Function index File listing

Man pages

CNV450kSet: CNV450kSet instances

Functions

CNV450kSet Man page
CNV450kSet-class Man page
CopyNumber450k Man page
computeSignificance Man page
computeSignificance,CNV450kSet-method Man page
dropSNPprobes Man page
dropSNPprobes,CNV450kSet-method Man page
findCNV Man page
findCNV,CNV450kSet-method Man page
getManifest Man page
getManifest,CNV450kSet-method Man page
getSegments Man page
getSegments,CNV450kSet-method Man page
getSummary Man page
getSummary,CNV450kSet-method Man page
intersectCNV Man page
intersectCNV,CNV450kSet-method Man page
normalize Man page
normalize,CNV450kSet-method Man page
plotDensity Man page
plotDensity,CNV450kSet-method Man page
plotPCA Man page
plotPCA,CNV450kSet-method Man page
plotSample Man page
plotSample,CNV450kSet-method Man page
segmentize Man page
segmentize,CNV450kSet-method Man page
subgroupDifference Man page
subgroupDifference,CNV450kSet-method Man page
write.csv,CNV450kSet-method Man page

Files

CopyNumber450k/.Rinstignore
CopyNumber450k/DESCRIPTION
CopyNumber450k/NAMESPACE
CopyNumber450k/R
CopyNumber450k/R/AllClasses.R
CopyNumber450k/R/AllGenerics.R
CopyNumber450k/R/CNV450kSet-accessors.R
CopyNumber450k/R/CNV450kSet-actions.R
CopyNumber450k/R/CNV450kSet-comparison.R
CopyNumber450k/R/CNV450kSet-initialize.R
CopyNumber450k/R/CNV450kSet-plot.R
CopyNumber450k/R/extract.R
CopyNumber450k/R/normalization.functional.R
CopyNumber450k/R/normalization.quantile.R
CopyNumber450k/TODO
CopyNumber450k/build
CopyNumber450k/build/vignette.rds
CopyNumber450k/inst
CopyNumber450k/inst/CITATION
CopyNumber450k/inst/doc
CopyNumber450k/inst/doc/CopyNumber450k.R
CopyNumber450k/inst/doc/CopyNumber450k.Rnw
CopyNumber450k/inst/doc/CopyNumber450k.pdf
CopyNumber450k/man
CopyNumber450k/man/CNV450kSet.Rd
CopyNumber450k/vignettes
CopyNumber450k/vignettes/CopyNumber450k.Rnw
CopyNumber450k/vignettes/biblio.bib
CopyNumber450k documentation built on Oct. 5, 2016, 4:11 a.m.

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