DeMixT: Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms

DeMixT is a software package that performs deconvolution on transcriptome data from a mixture of two or three components.

Package details

AuthorZeya Wang <zw17.rice@gmail.com>, Shaolong Cao<scao@mdanderson.org>, Wenyi Wang <wwang7@@mdanderson.org>
Bioconductor views Classification Coverage GeneExpression Microarray Sequencing Software StatisticalMethod TissueMicroarray
MaintainerShaolong Cao<scao@mdanderson.org>, Peng Yang <pyang7@mdanderson.org>
LicenseGPL-3
Version1.6.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DeMixT")

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DeMixT documentation built on Nov. 8, 2020, 6:41 p.m.