Director: A dynamic visualization tool of multi-level data

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Director is an R package designed to streamline the visualization of molecular effects in regulatory cascades. It utilizes the R package htmltools and a modified Sankey plugin of the JavaScript library D3 to provide a fast and easy, browser-enabled solution to discovering potentially interesting downstream effects of regulatory and/or co-expressed molecules. The diagrams are robust, interactive, and packaged as highly-portable HTML files that eliminate the need for third-party software to view. This enables a straightforward approach for scientists to interpret the data produced, and bioinformatics developers an alternative means to present relevant data.

Author
Katherine Icay [aut, cre]
Date of publication
None
Maintainer
Katherine Icay <katherine.icay@helsinki.fi>
License
GPL-3 + file LICENSE
Version
1.0.0
URLs

View on Bioconductor

Man pages

append2List
append2List
createList
createList
drawSankey
drawSankey
filterNumeric
filterNumeric
filterRelation
filterRelation
filterSubset
filterSubset
initSankey
initSankey
makeSankey
makeSankey
mesenchymal
Analysis results of Yang et al.'s (2013) master microRNA...
poorprog
Analysis results for poor prognosis serous ovarian cancer
writeSankey
writeSankey

Files in this package

Director/DESCRIPTION
Director/LICENSE
Director/NAMESPACE
Director/R
Director/R/data.R
Director/R/functions.R
Director/README.md
Director/build
Director/build/vignette.rds
Director/data
Director/data/ovca.rda
Director/inst
Director/inst/NEWS
Director/inst/doc
Director/inst/doc/vignette.R
Director/inst/doc/vignette.Rnw
Director/inst/doc/vignette.pdf
Director/inst/www
Director/inst/www/css
Director/inst/www/css/sankey.css
Director/inst/www/js
Director/inst/www/js/LICENSE
Director/inst/www/js/d3.min.js
Director/inst/www/js/d3.v3.js
Director/inst/www/js/sankey.js
Director/inst/www/layouts
Director/inst/www/layouts/sankey.html
Director/inst/www/sankey-binding.js
Director/man
Director/man/append2List.Rd
Director/man/createList.Rd
Director/man/drawSankey.Rd
Director/man/filterNumeric.Rd
Director/man/filterRelation.Rd
Director/man/filterSubset.Rd
Director/man/initSankey.Rd
Director/man/makeSankey.Rd
Director/man/mesenchymal.Rd
Director/man/poorprog.Rd
Director/man/writeSankey.Rd
Director/vignettes
Director/vignettes/figure1.png
Director/vignettes/figure2.png
Director/vignettes/figure3.png
Director/vignettes/figure4.png
Director/vignettes/vignette.Rnw