Man pages for ERSSA
Empirical RNA-seq Sample Size Analysis
| comb_gen | Calculate unique combinations of samples at varying replicate... |
| combinations.partial | Example list of combinations generated by comb_gen function. |
| condition_table.full | Example table of sample names and conditions |
| condition_table.partial | Example table of sample names and conditions |
| count_filter | Filter RNA-seq expression table |
| count_table.filtered.partial | Example count table of GTEx RNA-seq experiment, fitered by... |
| count_table.full | Example count table of GTEx RNA-seq experiment |
| count_table.partial | Example count table of GTEx RNA-seq experiment |
| deg.partial | Example list of DE genes generated by edgeR |
| erssa | Empirical RNA-seq Sample Size Analysis |
| erssa_deseq2 | Run DESeq2 for computed sample combinations |
| erssa_deseq2_parallel | Run DESeq2 for computed sample combinations with parallel... |
| erssa_edger | Run edgeR for computed sample combinations |
| erssa_edger_parallel | Run edgeR for computed sample combinations with parallel... |
| ggplot2_dotplot | Plot number of DE genes |
| ggplot2_intersectPlot | Plot number of DE genes that is common across combinations |
| ggplot2_marginPlot | Plot percent increase in detection of DE genes across... |
| ggplot2_TPR_FPRPlot | Plot TPR and FPR of each combination |
