EasyqpcR: EasyqpcR for low-throughput real-time quantitative PCR data analysis

This package is based on the qBase algorithms published by Hellemans et al. in 2007. The EasyqpcR package allows you to import easily qPCR data files as described in the vignette. Thereafter, you can calculate amplification efficiencies, relative quantities and their standard errors, normalization factors based on the best reference genes choosen (using the SLqPCR package), and then the normalized relative quantities, the NRQs scaled to your control and their standard errors. This package has been created for low-throughput qPCR data analysis.

AuthorLe Pape Sylvain
Date of publicationNone
MaintainerLe Pape Sylvain <sylvain.le.pape@univ-poitiers.fr>
LicenseGPL (>=2)
Version1.16.0

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Files in this package

EasyqpcR/DESCRIPTION
EasyqpcR/NAMESPACE
EasyqpcR/NEWS
EasyqpcR/R
EasyqpcR/R/badCt.R EasyqpcR/R/calData.R EasyqpcR/R/nrmData.R EasyqpcR/R/slope.R EasyqpcR/R/totData.R
EasyqpcR/build
EasyqpcR/build/vignette.rds
EasyqpcR/data
EasyqpcR/data/Efficiency_calculation.rda
EasyqpcR/data/Gene_maximisation.csv.gz
EasyqpcR/data/Gene_maximisation.rda
EasyqpcR/data/Gene_maximisation_cor.csv.gz
EasyqpcR/data/Gene_maximisation_cor.rda
EasyqpcR/data/qPCR_run1.csv.gz
EasyqpcR/data/qPCR_run1.rda
EasyqpcR/data/qPCR_run2.rda
EasyqpcR/data/qPCR_run3.rda
EasyqpcR/inst
EasyqpcR/inst/CITATION
EasyqpcR/inst/doc
EasyqpcR/inst/doc/vignette_EasyqpcR.R
EasyqpcR/inst/doc/vignette_EasyqpcR.Rnw
EasyqpcR/inst/doc/vignette_EasyqpcR.pdf
EasyqpcR/inst/extdata
EasyqpcR/inst/extdata/Gene_maximisation.csv
EasyqpcR/inst/extdata/Gene_maximisation_cor.csv
EasyqpcR/inst/extdata/qPCR_run1.csv
EasyqpcR/man
EasyqpcR/man/EasyqpcR-package.Rd EasyqpcR/man/Efficiency_calculation.Rd EasyqpcR/man/Gene_maximisation.Rd EasyqpcR/man/Gene_maximisation_cor.Rd EasyqpcR/man/badCt.Rd EasyqpcR/man/calData.Rd EasyqpcR/man/nrmData.Rd EasyqpcR/man/qPCR_run1.Rd EasyqpcR/man/qPCR_run2.Rd EasyqpcR/man/qPCR_run3.Rd EasyqpcR/man/slope.Rd EasyqpcR/man/totData.Rd
EasyqpcR/vignettes
EasyqpcR/vignettes/.install_extras
EasyqpcR/vignettes/Gene_max.jpg
EasyqpcR/vignettes/Gene_max2.jpg
EasyqpcR/vignettes/Gene_max3.jpg
EasyqpcR/vignettes/Makefile
EasyqpcR/vignettes/Sample_max.png
EasyqpcR/vignettes/dataimport.png
EasyqpcR/vignettes/dataimport2.png
EasyqpcR/vignettes/logoirtomit.jpg
EasyqpcR/vignettes/vignette_EasyqpcR.Rnw
EasyqpcR/vignettes/vignette_EasyqpcR.brf
EasyqpcR/vignettes/vignette_EasyqpcR.toc

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