inst/doc/ExperimentHub.R

In ExperimentHub: Client to access ExperimentHub resources

## ----style, echo = FALSE, results = 'asis'------------------------------------
BiocStyle::markdown()

## ----library, message=FALSE---------------------------------------------------
library(ExperimentHub)

## ----ExperiemntHub------------------------------------------------------------
eh = ExperimentHub()

## ----show---------------------------------------------------------------------
eh

## ----dataprovider-------------------------------------------------------------
head(unique(eh$dataprovider))

## ----species------------------------------------------------------------------
head(unique(eh$species))

## ----rdataclass---------------------------------------------------------------
head(unique(eh$rdataclass))

## ----alpine-------------------------------------------------------------------
apData <- query(eh, "alpineData")
apData

## ----show2--------------------------------------------------------------------
apData$preparerclass
df <- mcols(apData)

## ----length-------------------------------------------------------------------
length(eh)

## ----subset-------------------------------------------------------------------
mm <- query(eh, "mus musculus")
mm

## ----display, eval=FALSE------------------------------------------------------
#  d <- display(eh)

## ----dm2----------------------------------------------------------------------
apData
apData["EH166"]

## ----dm3----------------------------------------------------------------------
apData[["EH166"]]

## ----show-2-------------------------------------------------------------------
eh

## ----snapshot-----------------------------------------------------------------
snapshotDate(eh)

## ----possibleDates------------------------------------------------------------
pd <- possibleDates(eh)
pd

## ----setdate, eval=FALSE------------------------------------------------------
#  snapshotDate(ah) <- pd[1]

## ----sessionInfo--------------------------------------------------------------
sessionInfo()