dot-topo_ic_sim_titj: GAPGOM internal - .topo_ic_sim_titj()

In GAPGOM: GAPGOM (novel Gene Annotation Prediction and other GO Metrics)

Description

This function is an internal function and should not be called by the user.

Usage

.topo_ic_sim_titj(go_id1, go_id2, topoargs)

Arguments

go_id1	GO term of first term.
go_id2	GO term of second term.
topoargs	list containing all the neccesary paramters/arguments for the topoicsim algorithm, details can be view in the ".prepare_variables_topoicsim" function.

Details

Algorithm to calculate similarity between two GO terms. This function is made for calculating topological similarity of two GO terms in the GO DAG structure. The topological similarity is based on edge weights and information content (IC). [1]

Value

semantic topological similarity between the two given go terms.

Notes

Internal function used in (topo_ic_sim_term()).

References

[1] Ehsani R, Drablos F: TopoICSim: a new semantic similarity measure based on gene ontology. BMC Bioinformatics 2016, 17(1):296)

GAPGOM documentation built on Nov. 8, 2020, 8:08 p.m.