getSQLiteFile: Download and unzip the most recent GEOmetadb SQLite file
In GEOmetadb: A compilation of metadata from NCBI GEO
Description
Usage
Arguments
Value
Author(s)
References
Examples
View source: R/getSQLiteFile.R
Description
This function is the standard method for downloading and unzipping the
most recent GEOmetadb SQLite file from the server.
Usage
1
getSQLiteFile(destdir = getwd(), destfile = "GEOmetadb.sqlite.gz")
Arguments
destdir
The destination directory of the downloaded file
destfile
The filename of the downloaded file. This filename
should end in ".gz" as the unzipping assumes that is the case
Value
Prints some diagnostic information to the screen.
Returns the local filename for use later.
Author(s)
Sean Davis <sdavis2@mail.nih.gov>
References
http://meltzerlab.nci.nih.gov/apps/geo, http://gbnci.abcc.ncifcrf.gov/geo/
Examples
1
## Not run: geometadbfile <- getSQLiteFile()
GEOmetadb documentation built on May 31, 2017, 11 a.m.
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Description Usage Arguments Value Author(s) References Examples
View source: R/getSQLiteFile.R
Description
This function is the standard method for downloading and unzipping the most recent GEOmetadb SQLite file from the server.
Usage
1 | getSQLiteFile(destdir = getwd(), destfile = "GEOmetadb.sqlite.gz")
|
Arguments
destdir |
The destination directory of the downloaded file |
destfile |
The filename of the downloaded file. This filename should end in ".gz" as the unzipping assumes that is the case |
Value
Prints some diagnostic information to the screen.
Returns the local filename for use later.
Author(s)
Sean Davis <sdavis2@mail.nih.gov>
References
http://meltzerlab.nci.nih.gov/apps/geo, http://gbnci.abcc.ncifcrf.gov/geo/
Examples
1 | ## Not run: geometadbfile <- getSQLiteFile()
|
R Package Documentation
Browse R Packages
We want your feedback!
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