GSCA: GSCA: Gene Set Context Analysis

GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.

AuthorZhicheng Ji, Hongkai Ji
Date of publicationNone
MaintainerZhicheng Ji <zji4@jhu.edu>
LicenseGPL(>=2)
Version2.4.0

View on Bioconductor

Files in this package

GSCA/DESCRIPTION
GSCA/NAMESPACE
GSCA/NEWS
GSCA/R
GSCA/R/ConstructTG.R GSCA/R/GSCA.R GSCA/R/GSCAeda.R GSCA/R/GSCAplot.R GSCA/R/GSCAui.R GSCA/R/annotatePeaks.R GSCA/R/tabSearch.R
GSCA/README.md
GSCA/build
GSCA/build/vignette.rds
GSCA/data
GSCA/data/Oct4ESC_TG.rda
GSCA/data/STAT1_TG.rda
GSCA/data/geneIDdata.rda
GSCA/inst
GSCA/inst/CITATION
GSCA/inst/doc
GSCA/inst/doc/GSCA.R
GSCA/inst/doc/GSCA.Rnw
GSCA/inst/doc/GSCA.pdf
GSCA/inst/extdata
GSCA/inst/extdata/GSM288346_ES_Oct4.txt
GSCA/inst/extdata/Pou5f1_E14TG2a_GSE4189_Limma.txt
GSCA/inst/extdata/allreffile.rda
GSCA/inst/shiny
GSCA/inst/shiny/server.R
GSCA/inst/shiny/ui.R
GSCA/inst/shiny/www
GSCA/inst/shiny/www/GSCAmanual.pdf
GSCA/inst/shiny/www/ajaxloaderq.gif
GSCA/inst/shiny/www/busy.js
GSCA/inst/shiny/www/style.css
GSCA/man
GSCA/man/ConstructTG.Rd GSCA/man/GSCA-package.Rd GSCA/man/GSCA.Rd GSCA/man/GSCAeda.Rd GSCA/man/GSCAplot.Rd GSCA/man/GSCAui.Rd GSCA/man/Oct4ESC_TG.Rd GSCA/man/STAT1_TG.Rd GSCA/man/annotatePeaks.Rd GSCA/man/geneIDdata.Rd GSCA/man/tabSearch.Rd
GSCA/vignettes
GSCA/vignettes/GSCA.Rnw

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