GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.
|Author||Zhicheng Ji, Hongkai Ji|
|Date of publication||None|
|Maintainer||Zhicheng Ji <email@example.com>|
annotatePeaks: Annotate ChIPx peaks with genes by Entrez GeneIDs
ConstructTG: Construct target genes for a TF using TF-bound genes and...
geneIDdata: Homologene data
GSCAeda: GSCA follow-up exploratory data analysis
GSCA-package: GSCA: Gene Set Context Analysis
GSCAplot: Visualize GSCA output
GSCAui: Launch GSCA interactive User Interface
Oct4ESC_TG: Oct4 activated (+) and repressed (-) target genes in...
STAT1_TG: STAT1 activated (+) target genes defined from experimental...
tabSearch: Searches through GPL96, GPL1261, GPL570 or GPL571 compendium...