Defines functions anomDetectBAF

Documented in anomDetectBAF

# wrapper function to segment and filter anomalies in one step

anomDetectBAF <- function(intenData, genoData, scan.ids, chrom.ids, snp.ids,
                          centromere, low.qual.ids=NULL, ...) {
  segments <- anomSegmentBAF(intenData, genoData, scan.ids, chrom.ids, snp.ids)
  anoms <- anomFilterBAF(intenData, genoData, segments, snp.ids,
                         centromere, low.qual.ids, ...)

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GWASTools documentation built on Nov. 8, 2020, 7:49 p.m.