GraphPAC: Identification of Mutational Clusters in Proteins via a Graph Theoretical Approach.

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Identifies mutational clusters of amino acids in a protein while utilizing the proteins tertiary structure via a graph theoretical model.

Author
Gregory Ryslik, Hongyu Zhao
Date of publication
None
Maintainer
Gregory Ryslik <gregory.ryslik@yale.edu>
License
GPL-2
Version
1.16.0

View on Bioconductor

Man pages

Find.TSP.Path
Find.TSP.Path
GraphClust
GraphClust
graphPAC-package
Using Graph Theory to Identify Mutational Clusters of Amino...
Plot.Protein
Plot.Protein

Files in this package

GraphPAC/DESCRIPTION
GraphPAC/NAMESPACE
GraphPAC/R
GraphPAC/R/Find.TSP.Path.R
GraphPAC/R/GraphClust.R
GraphPAC/R/Plot.Protein.R
GraphPAC/R/unmap.clusters.R
GraphPAC/build
GraphPAC/build/vignette.rds
GraphPAC/inst
GraphPAC/inst/NEWS.Rd
GraphPAC/inst/doc
GraphPAC/inst/doc/GraphPAC.R
GraphPAC/inst/doc/GraphPAC.Rnw
GraphPAC/inst/doc/GraphPAC.pdf
GraphPAC/inst/unitTests
GraphPAC/inst/unitTests/test_Find.TSP.Path.R
GraphPAC/inst/unitTests/test_GraphClust.R
GraphPAC/inst/unitTests/test_unmap.clusters.R
GraphPAC/man
GraphPAC/man/Find.TSP.Path.Rd
GraphPAC/man/GraphClust.Rd
GraphPAC/man/Plot.Protein.Rd
GraphPAC/man/graphPAC-package.Rd
GraphPAC/tests
GraphPAC/tests/runTests.R
GraphPAC/vignettes
GraphPAC/vignettes/GraphPAC.Rnw
GraphPAC/vignettes/KRASCircle.pdf
GraphPAC/vignettes/KRASCircleAdjusted.pdf
GraphPAC/vignettes/OddProtein.jpeg
GraphPAC/vignettes/refs.bib