GraphPAC: Identification of Mutational Clusters in Proteins via a Graph Theoretical Approach.
Version 1.18.0

Identifies mutational clusters of amino acids in a protein while utilizing the proteins tertiary structure via a graph theoretical model.

Browse man pages Browse package API and functions Browse package files

AuthorGregory Ryslik, Hongyu Zhao
Bioconductor views Clustering Proteomics
Date of publicationNone
MaintainerGregory Ryslik <gregory.ryslik@yale.edu>
LicenseGPL-2
Version1.18.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GraphPAC")

Man pages

Find.TSP.Path: Find.TSP.Path
GraphClust: GraphClust
graphPAC-package: Using Graph Theory to Identify Mutational Clusters of Amino...
Plot.Protein: Plot.Protein

Functions

Find.TSP.Path Man page Source code
GraphClust Man page Source code
GraphPAC Man page
GraphPAC-package Man page
Plot.Protein Man page Source code
unmap.clusters Source code

Files

DESCRIPTION
NAMESPACE
R
R/Find.TSP.Path.R
R/GraphClust.R
R/Plot.Protein.R
R/unmap.clusters.R
build
build/vignette.rds
inst
inst/NEWS.Rd
inst/doc
inst/doc/GraphPAC.R
inst/doc/GraphPAC.Rnw
inst/doc/GraphPAC.pdf
inst/unitTests
inst/unitTests/test_Find.TSP.Path.R
inst/unitTests/test_GraphClust.R
inst/unitTests/test_unmap.clusters.R
man
man/Find.TSP.Path.Rd
man/GraphClust.Rd
man/Plot.Protein.Rd
man/graphPAC-package.Rd
tests
tests/runTests.R
vignettes
vignettes/GraphPAC.Rnw
vignettes/KRASCircle.pdf
vignettes/KRASCircleAdjusted.pdf
vignettes/OddProtein.jpeg
vignettes/refs.bib
GraphPAC documentation built on May 20, 2017, 9:33 p.m.