API for HMMcopy
Copy number prediction with correction for GC and mappability bias for HTS data
| Global functions | |
|---|---|
| HMMcopy | Man page |
| HMMcopy-dataset | Man page |
| HMMcopy-internal | Man page |
| HMMcopy-package | Man page |
| HMMsegment | Man page Source code |
| correctReadcount | Man page Source code |
| dirichletpdf | Source code |
| estimateTNoiseParamsMap | Source code |
| manualSegment | Source code |
| normal_copy | Man page |
| normalize | Man page Source code |
| plotBias | Man page Source code |
| plotCorrection | Man page Source code |
| plotParam | Man page Source code |
| plotSegments | Man page Source code |
| processSegments | Source code |
| rangedDataToSeg | Man page Source code |
| rangedDataToWig | Man page Source code |
| stateCols | Man page Source code |
| tdistPDF | Source code |
| tumour | Man page |
| tumour_copy | Man page |
| tumour_param | Man page |
| tumour_reads | Man page |
| tumour_segments | Man page |
| wigToArray | Man page Source code |
| wigToRangedData | Man page Source code |
| wigsToRangedData | Man page Source code |
