HPAStainR: Queries the Human Protein Atlas Staining Data for Multiple Proteins and Genes

This package is built around the HPAStainR function. The purpose of the HPAStainR function is to query the visual staining data in the Human Protein Atlas to return a table of staining ranked cell types. The function also has multiple arguements to personalize to output as well to include cancer data, csv readable names, modify the confidence levels of the results and more. The other functions exist exlcusively to easily acquire the data required to run HPAStainR.

Getting started

Package details

AuthorTim O. Nieuwenhuis [aut, cre] (<https://orcid.org/0000-0002-1995-3317>)
Bioconductor views GeneExpression GeneSetEnrichment
MaintainerTim O. Nieuwenhuis <tnieuwe1@jhmi.edu>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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HPAStainR documentation built on Feb. 11, 2021, 2:01 a.m.