hpa_downloaded_histology_v18: HPA histology dataset version 18

In HPAanalyze: Retrieve and analyze data from the Human Protein Atlas

Description

Dataset downloaded with hpaDownload('histology', version = 'v18'). This dataset is kept for the sake of backward compability. Please use 'hpa_histology_data' for the most updated built-in dataset.

Usage

hpa_downloaded_histology_v18

Format

A list of 3 tibbles

normal_tissue

Normal tissue IHC data

pathology

Cancer IHC data

subcellular_location

Subcellular location IF data

Details

Links to original data:

• https://v18.proteinatlas.org/download/normal_tissue.tsv.zip

• https://v18.proteinatlas.org/download/pathology.tsv.zip

• https://v18.proteinatlas.org/download/subcellular_location.tsv.zip

See Also

hpaDownload hpa_histology_data

Examples

  # load data
  data("hpa_downloaded_histology_v18")
  
  # access data frames
  normal_tissue_data <- hpa_downloaded_histology_v18$normal_tissue
  cancer_data <- hpa_downloaded_histology_v18$pathology
  subcell_location_data <- hpa_downloaded_histology_v18$subcellular_location

Example output

HPAanalyze documentation built on Nov. 26, 2020, 2:01 a.m.