Heatplus: Heatmaps with row and/or column covariates and colored clusters

Display a rectangular heatmap (intensity plot) of a data matrix. By default, both samples (columns) and features (row) of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.

AuthorAlexander Ploner <Alexander.Ploner@ki.se>
Date of publicationNone
MaintainerAlexander Ploner <Alexander.Ploner@ki.se>
LicenseGPL (>= 2)
Version2.20.0
https://github.com/alexploner/Heatplus

View on Bioconductor

Functions

annHeatmap Man page
annHeatmap2 Man page
annHeatmap.default Man page
annHeatmap.ExpressionSet Man page
breakColors Man page
BrewerClusterCol Man page
convAnnData Man page
doLegend Man page
extractArg Man page
g2r.colors Man page
getLeaves Man page
heatmap_2 Man page
heatmapLayout Man page
heatmap_plus Man page
modifyExistingList Man page
niceBreaks Man page
oldCutplot.dendrogram Man page
oldPicketplot Man page
picketPlot Man page
picketPlotControl Man page
plot.annHeatmap Man page
print.annHeatmap Man page
RainbowPastel Man page
regHeatmap Man page
regHeatmap.default Man page
RGBColVec Man page

Files

Heatplus/DESCRIPTION
Heatplus/NAMESPACE
Heatplus/NEWS
Heatplus/R
Heatplus/R/annHeatmap.R Heatplus/R/oldHeatplus.R
Heatplus/build
Heatplus/build/vignette.rds
Heatplus/inst
Heatplus/inst/doc
Heatplus/inst/doc/annHeatmap.R
Heatplus/inst/doc/annHeatmap.Rnw
Heatplus/inst/doc/annHeatmap.pdf
Heatplus/inst/doc/annHeatmapCommentedSource.R
Heatplus/inst/doc/annHeatmapCommentedSource.Rnw
Heatplus/inst/doc/annHeatmapCommentedSource.pdf
Heatplus/inst/doc/oldHeatplus.R
Heatplus/inst/doc/oldHeatplus.Rnw
Heatplus/inst/doc/oldHeatplus.pdf
Heatplus/man
Heatplus/man/BrewerClusterCol.Rd Heatplus/man/RGBColVec.Rd Heatplus/man/Undocumented.Rd Heatplus/man/annHeatmap.Rd Heatplus/man/annHeatmap2.Rd Heatplus/man/breakColors.Rd Heatplus/man/convAnnData.Rd Heatplus/man/doLegend.Rd Heatplus/man/g2r.colors.Rd Heatplus/man/heatmapLayout.Rd Heatplus/man/heatmap_2.Rd Heatplus/man/heatmap_plus.Rd Heatplus/man/modifyExistingList.Rd Heatplus/man/niceBreaks.Rd Heatplus/man/oldCutplot.dendrogram.Rd Heatplus/man/oldPicketplot.Rd Heatplus/man/picketPlot.Rd Heatplus/man/plot.annHeatmap.Rd Heatplus/man/print.annHeatmap.Rd Heatplus/man/regHeatmap.Rd
Heatplus/vignettes
Heatplus/vignettes/annHeatmap.Rnw
Heatplus/vignettes/annHeatmapCommentedSource.Rnw
Heatplus/vignettes/oldHeatplus.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.