Heatplus: Heatmaps with row and/or column covariates and colored clusters

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Display a rectangular heatmap (intensity plot) of a data matrix. By default, both samples (columns) and features (row) of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.

Author
Alexander Ploner <Alexander.Ploner@ki.se>
Date of publication
None
Maintainer
Alexander Ploner <Alexander.Ploner@ki.se>
License
GPL (>= 2)
Version
2.20.0
URLs

View on Bioconductor

Man pages

annHeatmap
Annotated heatmaps
annHeatmap2
Annotated heatmaps
breakColors
Color palette for (symmetric) breaks
BrewerClusterCol
Color scheme for clusters
convAnnData
Converting data frames for display as annotation
doLegend
A simple legend
g2r.colors
Palette from green to red via black
heatmap_2
Display Data as Heatmap
heatmapLayout
Generate a layout for an (annotated) heatmap
heatmap_plus
Display an Annotated Heatmap
modifyExistingList
Override existing list entries
niceBreaks
Get nice (symmetric) breaks for an interval
oldCutplot.dendrogram
Plot Subtrees of a Dendrogram in Different Colors
oldPicketplot
Barplots for Several Binary Variables
picketPlot
Display a data frame of annotation information
plot.annHeatmap
Plotting method for annotated heatmaps
print.annHeatmap
Printing information about annotated heatmaps
regHeatmap
Regular heatmaps with a legend
RGBColVec
Alternative color schemes
Undocumented
Undocumented functions

Files in this package

Heatplus/DESCRIPTION
Heatplus/NAMESPACE
Heatplus/NEWS
Heatplus/R
Heatplus/R/annHeatmap.R
Heatplus/R/oldHeatplus.R
Heatplus/build
Heatplus/build/vignette.rds
Heatplus/inst
Heatplus/inst/doc
Heatplus/inst/doc/annHeatmap.R
Heatplus/inst/doc/annHeatmap.Rnw
Heatplus/inst/doc/annHeatmap.pdf
Heatplus/inst/doc/annHeatmapCommentedSource.R
Heatplus/inst/doc/annHeatmapCommentedSource.Rnw
Heatplus/inst/doc/annHeatmapCommentedSource.pdf
Heatplus/inst/doc/oldHeatplus.R
Heatplus/inst/doc/oldHeatplus.Rnw
Heatplus/inst/doc/oldHeatplus.pdf
Heatplus/man
Heatplus/man/BrewerClusterCol.Rd
Heatplus/man/RGBColVec.Rd
Heatplus/man/Undocumented.Rd
Heatplus/man/annHeatmap.Rd
Heatplus/man/annHeatmap2.Rd
Heatplus/man/breakColors.Rd
Heatplus/man/convAnnData.Rd
Heatplus/man/doLegend.Rd
Heatplus/man/g2r.colors.Rd
Heatplus/man/heatmapLayout.Rd
Heatplus/man/heatmap_2.Rd
Heatplus/man/heatmap_plus.Rd
Heatplus/man/modifyExistingList.Rd
Heatplus/man/niceBreaks.Rd
Heatplus/man/oldCutplot.dendrogram.Rd
Heatplus/man/oldPicketplot.Rd
Heatplus/man/picketPlot.Rd
Heatplus/man/plot.annHeatmap.Rd
Heatplus/man/print.annHeatmap.Rd
Heatplus/man/regHeatmap.Rd
Heatplus/vignettes
Heatplus/vignettes/annHeatmap.Rnw
Heatplus/vignettes/annHeatmapCommentedSource.Rnw
Heatplus/vignettes/oldHeatplus.Rnw