IPPD: Isotopic peak pattern deconvolution for Protein Mass Spectrometry by template matching
Version 1.24.0

The package provides functionality to extract isotopic peak patterns from raw mass spectra. This is done by fitting a large set of template basis functions to the raw spectrum using either nonnegative least squares or least absolute deviation fittting. The package offers a flexible function which tries to estimate model parameters in a way tailored to the peak shapes in the data. The package also provides functionality to process LCMS runs.

Package details

AuthorMartin Slawski <ms@cs.uni-saarland.de>, Rene Hussong <rene.hussong@uni.lu>, Andreas Hildebrandt <andreas.hildebrandt@uni-mainz.de>, Matthias Hein <hein@cs.uni-saarland.de>
Bioconductor views Proteomics
MaintainerMartin Slawski <ms@cs.uni-saarland.de>
LicenseGPL (version 2 or later)
Version1.24.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("IPPD")

Try the IPPD package in your browser

Any scripts or data that you put into this service are public.

IPPD documentation built on May 31, 2017, 10:59 a.m.